Mercurial > repos > imgteam > spot_detection_2d

diff spot_detection_2d.xml @ 6:73efacdaf71a draft default tip

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/spot_detection_2d/ commit e5a00acbad81d7a7a4ca21edf79e9f1104f44e95
author imgteam
date Fri, 06 Mar 2026 18:10:51 +0000
parents e8c9e104e109
children
line wrap: on
line diff
--- a/spot_detection_2d.xml	Wed Sep 25 08:19:30 2024 +0000
+++ b/spot_detection_2d.xml	Fri Mar 06 18:10:51 2026 +0000
@@ -1,12 +1,10 @@
-<tool id="ip_spot_detection_2d" name="Perform 2-D spot detection" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05">
+<tool id="ip_spot_detection_2d" name="Perform 2-D spot detection" version="0.2" profile="20.05">
     <description></description>
     <macros>
         <import>creators.xml</import>
-        <token name="@TOOL_VERSION@">0.1</token>
-        <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <creator>
-        <expand macro="creators/bmcv" />
+        <expand macro="creators/bmcv"/>
     </creator>
     <edam_operations>
         <edam_operation>operation_3443</edam_operation>
@@ -21,6 +19,9 @@
         <requirement type="package" version="0.21">scikit-image</requirement>
         <requirement type="package" version="2024.6.18">tifffile</requirement>
     </requirements>
+    <required_files>
+        <include type="glob" path="*.py"/>
+    </required_files>
     <command detect_errors="aggressive">
     <![CDATA[
          python '$__tool_directory__/spot_detection_2d.py'
@@ -57,7 +58,7 @@
     <tests>
         <!-- Multi-frame input -->
         <test>
-            <param name="fn_in" value="input1.tif"/>
+            <param name="fn_in" value="input1.tiff"/>
             <param name="frame_1st" value="1"/>
             <param name="frame_end" value="0"/>
             <param name="filter_type" value="LoG"/>
@@ -70,7 +71,7 @@
         </test>
         <!-- Single-frame input -->
         <test>
-            <param name="fn_in" value="input2.tif"/>
+            <param name="fn_in" value="input2.tiff"/>
             <param name="frame_1st" value="1"/>
             <param name="frame_end" value="0"/>
             <param name="filter_type" value="LoG"/>