Mercurial > repos > imgteam > visceral_evaluatesegmentation

diff visceral-evaluatesegmentation.xml @ 0:8c1a805c2fc5 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/visceral-evaluatesegmentation commit c3f4b766f03770f094fda6bda0a5882c0ebd4581
author imgteam
date Sat, 09 Feb 2019 14:48:18 -0500
parents
children 4d042d197ac3
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/visceral-evaluatesegmentation.xml	Sat Feb 09 14:48:18 2019 -0500
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+<tool id="ip_visceral_evaluatesegmentation" name="Visceral" version="0.5">
+    <description>Evaluate Segmentation</description>
+    <requirements>
+        <!--requirement type="package" version="9c">jpeg</requirement-->
+        <!--requirement type="package" version="4.13.0">libitk</requirement-->
+        <requirement type="package" version="2015.07.03">visceral-evaluatesegmentation</requirement>
+    </requirements>
+    <command>
+        <![CDATA[
+        EvaluateSegmentation '$gt_path' '$seg_path' -xml '$output'
+        ]]>
+    </command>
+    <inputs>
+        <param name="gt_path" type="data" format="tiff,png,jpg,bmp" label="Ground Truth Image"/>
+        <param name="seg_path" type="data" format="tiff,png,jpg,bmp" label="Segmented Image"/>
+    </inputs>
+    <outputs>
+        <data format="xml" name="output"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="gt_path" value="sample.png" />
+            <param name="seg_path" value="sample.png" />
+            <output name="output" value="out.xml" ftype="xml" lines_diff="15" />
+        </test>
+    </tests>
+    <help>
+    **What it does**
+
+    Calculates Metrics for Evaluating Image Segmentation</help>
+    <citations>
+        <citation type="doi">10.1186/s12880-015-0068-x</citation>
+    </citations>
+</tool>