Mercurial > repos > imgteam > voronoi_tesselation

comparison voronoi_tessellation.xml @ 0:8b74843c136e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/voronoi_tesselation commit 43f036ed5341c36a1e076f9df9f47a3743ef4e6f
author imgteam
date Sat, 09 Mar 2024 22:27:23 +0000
parents
children e7fdea8385f0
comparison
equal deleted inserted replaced
-1:000000000000 0:8b74843c136e
1 <tool id="voronoi_tessellation" name="Compute Voronoi tessellation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0">
2 <description>with scikit-image</description>
3 <macros>
4 <token name="@TOOL_VERSION@">0.22.0</token>
5 <token name="@VERSION_SUFFIX@">0</token>
6 </macros>
7 <edam_operations>
8 <edam_operation>operation_3443</edam_operation>
9 </edam_operations>
10 <xrefs>
11 <xref type="bio.tools">scikit-image</xref>
12 <xref type="biii">scikit-image</xref>
13 </xrefs>
14 <requirements>
15 <requirement type="package" version="1.26.4">numpy</requirement>
16 <requirement type="package" version="1.12.0">scipy</requirement>
17 <requirement type="package" version="0.22.0">scikit-image</requirement>
18 </requirements>
19 <command><![CDATA[
20
21 ## Inputs
22
23 python '$__tool_directory__/voronoi_tessellation.py' '$input'
24
25 ## Outputs
26
27 ./result.tiff
28
29 ]]>
30 </command>
31 <inputs>
32 <param name="input" type="data" format="png,tiff" label="Labeled image" />
33 </inputs>
34 <outputs>
35 <data format="tiff" name="result" from_work_dir="result.tiff" />
36 </outputs>
37 <tests>
38 <test>
39 <param name="input" value="input1.tiff" />
40 <output name="result" value="input1_result.tiff" ftype="tiff" compare="sim_size" delta="0" />
41 </test>
42 </tests>
43 <help>
44
45 This tool computes Voronoi tessellations for labeled images.
46 Voronoi tessellations are also known as Vornoi diagrams, or Dirichlet tessellations.
47 Zero labels are treated as image background.
48
49 </help>
50 <citations>
51 <citation type="doi">10.7717/peerj.453</citation>
52 </citations>
53 </tool>