Mercurial > repos > imgteam > voronoi_tesselation
view voronoi_tessellation.xml @ 2:412d7478ec92 draft
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author | imgteam |
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date | Wed, 24 Apr 2024 08:13:41 +0000 |
parents | e7fdea8385f0 |
children | 1944b0fccdbd |
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<tool id="voronoi_tessellation" name="Compute Voronoi tessellation" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="23.0"> <description>with scikit-image</description> <macros> <import>creators.xml</import> <token name="@TOOL_VERSION@">0.22.0</token> <token name="@VERSION_SUFFIX@">2</token> </macros> <edam_operations> <edam_operation>operation_3443</edam_operation> </edam_operations> <xrefs> <xref type="bio.tools">scikit-image</xref> <xref type="biii">scikit-image</xref> </xrefs> <requirements> <requirement type="package" version="@TOOL_VERSION@">scikit-image</requirement> <requirement type="package" version="1.26.4">numpy</requirement> <requirement type="package" version="1.12.0">scipy</requirement> <requirement type="package" version="0.1">giatools</requirement> </requirements> <command><![CDATA[ ## Inputs python '$__tool_directory__/voronoi_tessellation.py' '$input' ## Outputs ./result.tiff ]]> </command> <inputs> <param name="input" type="data" format="png,tiff" label="Input image" help="Must be a label map." /> </inputs> <outputs> <data format="tiff" name="result" from_work_dir="result.tiff" /> </outputs> <tests> <test> <param name="input" value="input1.tiff" /> <output name="result" ftype="tiff"> <assert_contents> <has_image_width width="10"/> <has_image_height height="10"/> <has_image_channels channels="1"/> <has_image_n_labels n="4"/> <has_image_n_labels n="0" labels="0"/> </assert_contents> </output> </test> </tests> <help> **Computes Voronoi tessellations for labeled images.** Voronoi tessellations are also known as Vornoi diagrams, or Dirichlet tessellations. Zero labels are treated as image background. </help> <citations> <citation type="doi">10.7717/peerj.453</citation> </citations> </tool>