Mercurial > repos > imgteam > wsi_extract_top_view

comparison wsi_extract_top_view.xml @ 1:cfe88c6041e9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/wsi_extract_top_view/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:03:44 -0500
parents a1d02d2e814a
children 3bd767eee603
comparison
equal deleted inserted replaced
0:a1d02d2e814a 1:cfe88c6041e9
1 <tool id="ip_wsi_extract_top_view" name="Extract top view" version="0.1"> 1 <tool id="ip_wsi_extract_top_view" name="Extract top view" version="0.2">
2 <description>from whole-slice image</description> 2 <description>from whole-slice image</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 4 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement> 5 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="1.1.1">openslide-python</requirement> 6 <requirement type="package" version="1.1.1">openslide-python</requirement>
7 <requirement type="package" version="0.5">glob2</requirement> 7 <requirement type="package" version="0.5">glob2</requirement>
8 <requirement type="package" version="0.15.1">tifffile</requirement>
8 </requirements> 9 </requirements>
9 <command> 10 <command detect_errors="aggressive">
10 <![CDATA[ 11 <![CDATA[
11 python '$__tool_directory__/wsi_extract_top_view.py' '$input' '$output' 12 python '$__tool_directory__/wsi_extract_top_view.py' '$input' '$output'
12 ]]> 13 ]]>
13 </command> 14 </command>
14 <inputs> 15 <inputs>