Mercurial > repos > imgteam > wsi_extract_top_view

comparison wsi_extract_top_view.xml @ 2:3bd767eee603 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tree/master/tools/wsi_extract_top_view/ commit 2286a6c9da88596349ed9d967c51541409c0a7bf
author imgteam
date Mon, 13 Nov 2023 22:12:44 +0000
parents cfe88c6041e9
children
comparison
equal deleted inserted replaced
1:cfe88c6041e9 2:3bd767eee603
1 <tool id="ip_wsi_extract_top_view" name="Extract top view" version="0.2"> 1 <tool id="ip_wsi_extract_top_view" name="Extract top view from whole-slide image" version="0.2-2">
2 <description>from whole-slice image</description> 2 <description>with OpenSlide</description>
3 <edam_operations>
4 <edam_operation>operation_3443</edam_operation>
5 </edam_operations>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="0.14.2">scikit-image</requirement> 7 <requirement type="package" version="0.14.2">scikit-image</requirement>
5 <requirement type="package" version="1.15.4">numpy</requirement> 8 <requirement type="package" version="1.15.4">numpy</requirement>
6 <requirement type="package" version="1.1.1">openslide-python</requirement> 9 <requirement type="package" version="1.1.1">openslide-python</requirement>
7 <requirement type="package" version="0.5">glob2</requirement> 10 <requirement type="package" version="0.5">glob2</requirement>
25 </test> 28 </test>
26 </tests> 29 </tests>
27 <help> 30 <help>
28 **What it does** 31 **What it does**
29 32
30 Extracts the top view from a whole-slice image, also known as virtual slide, which are high-resolution images used in digital pathology. 33 Extracts the top view from a whole-slide image, also known as virtual slide, which are high-resolution images used in digital pathology.
31 </help> 34 </help>
32 <citations> 35 <citations>
33 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 36 <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation>
34 </citations> 37 </citations>
35 </tool> 38 </tool>