Mercurial > repos > imgteam > wsi_extract_top_view

diff wsi_extract_top_view.py @ 1:cfe88c6041e9 draft

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"planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/wsi_extract_top_view/ commit 3d389fdec0db29cf6fbd783c0501455bf624fa90"
author imgteam
date Wed, 18 Dec 2019 05:03:44 -0500
parents a1d02d2e814a
children 3bd767eee603
line wrap: on
line diff
--- a/wsi_extract_top_view.py	Sat Feb 09 14:49:03 2019 -0500
+++ b/wsi_extract_top_view.py	Wed Dec 18 05:03:44 2019 -0500
@@ -4,7 +4,7 @@
 import fnmatch
 import skimage.io
 import numpy as np
-
+ 
 def wsi_extract_top_view(input_path, out_path):
     img_raw = openslide.OpenSlide(input_path)
     top_size = img_raw.level_dimensions[len(img_raw.level_dimensions)-1]
@@ -18,5 +18,5 @@
     parser.add_argument('input_file', type=argparse.FileType('r'), help='input file')
     parser.add_argument('out_file', help='out file')
     args = parser.parse_args()
-
+ 
     wsi_extract_top_view(args.input_file.name, args.out_file)