Mercurial > repos > immport-devteam > check_headers
comparison getHeaders.xml @ 1:05440ef97f8b draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/check_headers commit 14d780f8710fb0962a85c262d0689a9551f4f8e1"
| author | azomics |
|---|---|
| date | Tue, 14 Jul 2020 09:46:31 -0400 |
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| 0:e88c99a4fb36 | 1:05440ef97f8b |
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| 1 <tool id="get_headers" name="Check headers" version="1.1+galaxy0" profile="18.01"> | |
| 2 <description>of any set of flowtext files</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="3.8.3">python</requirement> | |
| 5 </requirements> | |
| 6 <stdio> | |
| 7 <exit_code range="1:" /> | |
| 8 </stdio> | |
| 9 <command><![CDATA[ | |
| 10 python3 '$__tool_directory__/getHeaders.py' -o '${output_file}' | |
| 11 #for $f in $input | |
| 12 -i '${f}' | |
| 13 -n '${f.name}' | |
| 14 #end for | |
| 15 ]]> | |
| 16 </command> | |
| 17 <inputs> | |
| 18 <param format="flowtext,tabular,txt" name="input" type="data_collection" collection_type="list" label="Text files Collection"/> | |
| 19 </inputs> | |
| 20 <outputs> | |
| 21 <data format="tabular" name="output_file" label="Headers of files in ${input.name}"/> | |
| 22 </outputs> | |
| 23 <tests> | |
| 24 <test> | |
| 25 <param name="input"> | |
| 26 <collection type="list"> | |
| 27 <element name="input1.txt" value="input1.txt"/> | |
| 28 <element name="input2.txt" value="input2.txt"/> | |
| 29 <element name="input3.txt" value="input3.txt"/> | |
| 30 </collection> | |
| 31 </param> | |
| 32 <output name="output_file" file="output.tabular" lines_diff="4"/> | |
| 33 </test> | |
| 34 </tests> | |
| 35 <help><![CDATA[ | |
| 36 This tool returns a table of the headers of a set of text files. | |
| 37 | |
| 38 ----- | |
| 39 | |
| 40 **Input files** | |
| 41 | |
| 42 This tool requires collections of txt, flowtext or tabular files as input. | |
| 43 | |
| 44 **Output file** | |
| 45 | |
| 46 The output file is a table listing the headers for each file. | |
| 47 | |
| 48 ----- | |
| 49 | |
| 50 **Example** | |
| 51 | |
| 52 *File1*:: | |
| 53 | |
| 54 Marker1 Marker2 Marker3 | |
| 55 34 45 12 | |
| 56 33 65 10 | |
| 57 | |
| 58 *File2*:: | |
| 59 | |
| 60 Marker4 Marker5 Marker3 | |
| 61 19 62 98 | |
| 62 12 36 58 | |
| 63 | |
| 64 *Output*:: | |
| 65 | |
| 66 Index 1 2 3 | |
| 67 File1 Marker1 Marker2 Marker3 | |
| 68 File2 Marker4 Marker5 Marker3 | |
| 69 ]]> | |
| 70 </help> | |
| 71 </tool> |