Mercurial > repos > immport-devteam > check_headers
diff getHeaders.xml @ 1:05440ef97f8b draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/check_headers commit 14d780f8710fb0962a85c262d0689a9551f4f8e1"
author | azomics |
---|---|
date | Tue, 14 Jul 2020 09:46:31 -0400 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getHeaders.xml Tue Jul 14 09:46:31 2020 -0400 @@ -0,0 +1,71 @@ +<tool id="get_headers" name="Check headers" version="1.1+galaxy0" profile="18.01"> + <description>of any set of flowtext files</description> + <requirements> + <requirement type="package" version="3.8.3">python</requirement> + </requirements> + <stdio> + <exit_code range="1:" /> + </stdio> + <command><![CDATA[ + python3 '$__tool_directory__/getHeaders.py' -o '${output_file}' + #for $f in $input + -i '${f}' + -n '${f.name}' + #end for + ]]> + </command> + <inputs> + <param format="flowtext,tabular,txt" name="input" type="data_collection" collection_type="list" label="Text files Collection"/> + </inputs> + <outputs> + <data format="tabular" name="output_file" label="Headers of files in ${input.name}"/> + </outputs> + <tests> + <test> + <param name="input"> + <collection type="list"> + <element name="input1.txt" value="input1.txt"/> + <element name="input2.txt" value="input2.txt"/> + <element name="input3.txt" value="input3.txt"/> + </collection> + </param> + <output name="output_file" file="output.tabular" lines_diff="4"/> + </test> + </tests> + <help><![CDATA[ + This tool returns a table of the headers of a set of text files. + +----- + +**Input files** + +This tool requires collections of txt, flowtext or tabular files as input. + +**Output file** + +The output file is a table listing the headers for each file. + +----- + +**Example** + +*File1*:: + + Marker1 Marker2 Marker3 + 34 45 12 + 33 65 10 + +*File2*:: + + Marker4 Marker5 Marker3 + 19 62 98 + 12 36 58 + +*Output*:: + + Index 1 2 3 + File1 Marker1 Marker2 Marker3 + File2 Marker4 Marker5 Marker3 + ]]> + </help> +</tool>