Mercurial > repos > immport-devteam > flow_overview
annotate js/parallelCoordinates.js @ 1:b5453d07f740 draft default tip
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
author | azomics |
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date | Wed, 29 Jul 2020 17:03:53 -0400 |
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b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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1 // Copyright (c) 2016 Northrop Grumman. |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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2 // All rights reserved. |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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3 /* |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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4 * Initialize variables for parallelCoordinates display |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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5 */ |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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6 var pCoordApp = pCoordApp || {}; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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7 pCoordApp.allPopulations = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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8 pCoordApp.selectedPopulations = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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9 pCoordApp.origData; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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10 pCoordApp.flowData; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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11 pCoordApp.headers = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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12 pCoordApp.foreground; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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13 pCoordApp.background; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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14 pCoordApp.populations = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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15 pCoordApp.allLines; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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16 pCoordApp.lines = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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17 pCoordApp.selectedLines = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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18 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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19 var displayAll = function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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20 displayParallelPlot(); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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21 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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22 /* |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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23 * Display the Population Legend |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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24 */ |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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25 var displayPopTable = function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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26 $('#popTable tbody').empty(); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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27 pCoordApp.origData.map(function(d,index) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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28 $('#popTable tbody') |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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29 .append('<tr><td align="center"><input type="checkbox" ' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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30 + 'id="pop' + d.Population + '" ' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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31 + 'checked class="popSelect" value=' + index + '/></td>' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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32 + '<td title="' + newNames[d.Population] + '">' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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33 + newNames[d.Population] |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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34 + '</td><td><span style="background-color:' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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35 + color_palette[0][index + 1][0] |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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36 + '"> </span></td>' |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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37 + '<td>' + d.Percentage + '</td></tr>'); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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38 }); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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39 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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40 $('#popSelectAll').click(function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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41 var checkAll = $("#popSelectAll").prop('checked'); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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42 if (checkAll) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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43 $(".popSelect").prop("checked", true); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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44 for (var i = 0; i < pCoordApp.allLines; i ++){ |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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45 pCoordApp.selectedLines.push(i); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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46 pCoordApp.lines.push(i); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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47 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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48 } else { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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49 $(".popSelect").prop("checked", false); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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50 pCoordApp.selectedLines = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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51 pCoordApp.lines = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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52 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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53 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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54 pCoordApp.selectedPopulations = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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55 $('.popSelect').each(function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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56 if (this.checked) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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57 pCoordApp.selectedPopulations.push(parseInt(this.value)); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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58 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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59 }); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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60 displayTableGrid(); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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61 if (checkAll) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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62 displayParallelPlot(); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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63 } else { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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64 updateParallelForeground(); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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65 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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66 }); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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67 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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68 $('.popSelect').click(function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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69 if ($('.popSelect').length == $(".popSelect:checked").length) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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70 $('#popSelectAll').prop("checked",true); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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71 } else { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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72 $('#popSelectAll').prop("checked",false); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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73 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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74 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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75 pCoordApp.selectedPopulations = []; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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76 $('.popSelect').each(function() { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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77 if (this.checked) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
azomics
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78 pCoordApp.selectedPopulations.push(parseInt(this.value)); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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79 } |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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80 }); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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81 |
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82 pCoordApp.selectedLines = []; |
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83 pCoordApp.lines = []; |
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84 |
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85 pCoordApp.origData.forEach(function(d,idx){ |
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86 if ($.inArray(pCoordApp.populations.indexOf(d.Population), pCoordApp.selectedPopulations) > -1) { |
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87 pCoordApp.selectedLines.push(idx); |
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88 pCoordApp.lines.push(idx); |
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89 } |
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90 }); |
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91 |
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92 displayTableGrid(); |
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93 updateParallelForeground(); |
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94 }); |
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95 updatePopTable(); |
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96 }; |
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97 |
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98 var updatePopTable = function() { |
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99 $('.popSelect').each(function() { |
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100 var pop = parseInt(this.value), |
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101 selectedPops = pCoordApp.origData.map(function(d){ |
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102 if ($.inArray(d.idx, pCoordApp.selectedLines) > -1){ |
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103 return pCoordApp.populations.indexOf(d.Population); |
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104 } |
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105 }); |
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106 if ($.inArray(pop,selectedPops) > -1) { |
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107 this.checked = true; |
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108 } else { |
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109 this.checked = false; |
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110 } |
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111 }); |
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112 }; |
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113 |
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114 /* |
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115 * Display the table under the graph |
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116 */ |
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117 var displayTableGrid = function() { |
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118 var updatedData = [], |
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119 displayData = [], |
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120 colNames = [], |
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121 pctargets = [], |
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122 colTable = [], |
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123 tableHTML = [], |
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124 textCol = [], |
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125 colOrder = [], |
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126 targetCol = 0; |
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127 |
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128 $("#tableDiv").empty(); |
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129 updatedData = $.extend(true, [], tableContent); |
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130 updatedData.forEach(function(d, idx){d.idx = idx}); |
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131 displayData = updatedData.filter(function(d, index) { |
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132 if ($.inArray(index,pCoordApp.selectedLines) > -1) { |
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133 return d; |
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134 } |
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135 }); |
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136 |
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137 targetCol = pCoordApp.headers.length - 2; |
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138 pCoordApp.headers.forEach(function(d,i){ |
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139 colTable.push("<th>" + d + "</th>"); |
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140 colNames.push({"data":d}); |
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141 if (i < targetCol){ |
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142 pctargets.push(i); |
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143 } |
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144 }); |
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145 textCol = [targetCol, targetCol + 1]; |
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146 colOrder = textCol.concat(pctargets); |
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147 tableHTML = [ |
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148 '<table id="pcTable" class="pctable display compact" cellspacing="0" width="100%">', |
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149 '<thead>', |
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150 '<tr>', |
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151 colTable.join("\n"), |
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152 '</tr>', |
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153 '</thead>', |
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154 '</table>', |
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155 ]; |
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156 |
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157 $('#tableDiv').html(tableHTML.join("\n")); |
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158 var pcTable = $('#pcTable').DataTable({ |
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159 columns: colNames, |
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160 data: displayData, |
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161 order: [[ targetCol, "asc" ]], |
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162 pageLength: 10, |
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163 //paging: false, |
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164 scrollY: 250, |
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165 scrollCollapse: true, |
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166 scrollX: true, |
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167 dom: '<"top"B>t<"bottom"lip><"clear">', |
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168 columnDefs: [{ |
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169 targets: pctargets, |
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170 className: "dt-body-right", |
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171 }, { |
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172 targets: [targetCol, targetCol+1], |
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173 className: "dt-body-center" |
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174 }], |
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175 buttons: [ |
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176 'copy', 'pdfHtml5','csvHtml5', 'colvis' |
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177 ], |
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178 colReorder: { |
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179 order:colOrder |
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180 }, |
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181 select: true |
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182 }); |
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183 |
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184 $('#pcTable').on('mouseover', 'tr', function() { |
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185 var data = pcTable.row(this).data(); |
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186 if (data != undefined) { |
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187 var line = data.idx; |
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188 pCoordApp.selectedLines = [ line ]; |
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189 updateParallelForeground(); |
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190 } |
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191 }); |
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192 $('#pcTable').on('mouseleave', 'tr', function() { |
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193 pCoordApp.selectedLines = []; |
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194 for (var i = 0, j = pCoordApp.lines.length; i < j; i++) { |
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195 pCoordApp.selectedLines.push(pCoordApp.lines[i]); |
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196 } |
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197 updateParallelForeground(); |
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198 }); |
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199 }; |
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200 |
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201 /* |
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202 * Display The Main Plot |
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203 */ |
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204 var displayParallelPlot = function() { |
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205 var margin = {top: 30, right: 10, bottom: 10, left: 10}, |
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206 h = $("#chartDiv").height()/1.5, |
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207 w = $("#plotDiv").width(), |
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208 width = w - margin.left - margin.right, |
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209 height = h - margin.top - margin.bottom, |
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210 dragging = {}, |
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211 y = {}; |
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212 |
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213 $("#plotDiv").empty(); |
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214 $("#plotDiv").height(h); |
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215 var svg = d3.select("#plotDiv").append("svg") |
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216 .attr("width", width + margin.left + margin.right) |
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217 .attr("height", height + margin.top + margin.bottom) |
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218 .append("g") |
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219 .attr("transform", "translate(" + margin.left + "," + margin.top + ")"); |
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220 |
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221 // Y axis label |
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222 svg.append("text") |
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223 .attr("class", "ylabel") |
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224 .attr("transform", "rotate(-90)") |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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225 .attr("y", 0 - margin.left) |
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226 .attr("x", 0 - (height / 2)) |
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227 .attr("dy", "1em") |
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228 .style("text-anchor", "middle") |
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229 .text("MFI"); |
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230 |
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231 var x = d3.scale.ordinal().rangePoints([0, width], 1); |
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232 |
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233 // Use this to scale line width to percentage population |
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234 var pd = d3.extent(pCoordApp.origData, function(p) { |
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235 return +p['Percentage']; |
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236 }); |
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237 var popScale = d3.scale.linear().range([1,5]).domain(pd); |
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238 |
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239 var line = d3.svg.line(); |
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240 var axis = d3.svg.axis().orient("left").ticks(8); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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241 |
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242 var dimensions = d3.keys(pCoordApp.flowData[0]).filter(function(d) { |
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243 return (y[d] = d3.scale.linear() |
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244 .domain(d3.extent(pCoordApp.flowData,function(p) { return +p[d]; })) |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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245 .range([height, 0])); |
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246 }); |
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247 x.domain(dimensions); |
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248 |
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249 function path(d) { |
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250 return line(dimensions.map(function(p) { |
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251 return [x(p), y[p](d[p])]; |
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252 })); |
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253 } |
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254 function position(d) { |
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255 var v = dragging[d]; |
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256 return v == null ? x(d) : v; |
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257 } |
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258 function transition(g) { |
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259 return g.transition().duration(500); |
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260 } |
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261 function brush() { |
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262 var actives = dimensions.filter(function(p) { |
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263 return !y[p].brush.empty(); |
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264 }); |
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265 var extents = actives.map(function(p) { |
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266 return y[p].brush.extent(); |
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267 }); |
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268 var indices = pCoordApp.origData.filter(function(d) { |
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269 var line = d.idx; |
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270 var tf = actives.every(function(p,i) { |
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271 return extents[i][0] <= pCoordApp.flowData[line][p] && |
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272 pCoordApp.flowData[line][p] <= extents[i][1]; |
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273 }); |
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274 if (tf) { |
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275 return line.toString(); |
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276 } |
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277 }); |
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278 pCoordApp.selectedLines = indices.map(function(d) { |
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279 return d.idx; |
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280 }); |
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281 pCoordApp.lines = indices.map(function(d) { |
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282 return d.idx; |
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283 }); |
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284 |
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285 updateParallelForeground(); |
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286 updatePopTable(); |
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287 displayTableGrid(); |
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288 }; |
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289 |
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290 // Display paths in light gray color, to use as reference |
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291 pCoordApp.background = svg.append("g") |
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292 .attr("class", "background") |
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293 .selectAll("path") |
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294 .data(pCoordApp.flowData) |
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295 .enter().append("path") |
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296 .attr("d", path); |
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297 |
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298 // Add foreground lines for focus, color by population. |
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299 pCoordApp.foreground = svg.append("g") |
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300 .attr("class", "foreground") |
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301 .selectAll("path") |
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302 .data(pCoordApp.origData) |
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303 .enter().append("path") |
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304 .attr("d", path) |
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305 .attr("stroke",function(d){ |
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306 var pop = pCoordApp.populations.indexOf(d.Population) + 1; |
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307 return color_palette[0][pop][0]; |
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308 }) |
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309 //.attr("stroke-width", 2); |
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310 // Use this if you want to scale the lines based on |
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311 // population percentage |
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312 .attr("stroke-width", function(d) { |
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313 var pop = pCoordApp.populations.indexOf(d.Population); |
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314 var w = popScale(pCoordApp.origData[pop]['Percentage']); |
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315 w = parseInt(w); |
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316 return w; |
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317 }); |
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318 |
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319 // Add a group element for each dimension. |
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320 var g = svg.selectAll(".dimension") |
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321 .data(dimensions) |
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322 .enter().append("g") |
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323 .attr("class", "dimension") |
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324 .attr("transform", function(d) { return "translate(" + x(d) + ")"; }) |
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325 .call(d3.behavior.drag() |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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326 .origin(function(d) { return {x: x(d)}; }) |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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327 .on("dragstart", function(d) { |
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328 dragging[d] = x(d); |
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329 pCoordApp.background.attr("visibility", "hidden"); |
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330 }) |
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331 .on("drag", function(d) { |
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332 dragging[d] = Math.min(width, Math.max(0, d3.event.x)); |
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333 pCoordApp.foreground.attr("d", path); |
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334 dimensions.sort(function(a, b) { |
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335 return position(a) - position(b); |
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336 }); |
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337 x.domain(dimensions); |
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338 g.attr("transform", function(d) { |
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339 return "translate(" + position(d) + ")"; |
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340 }); |
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341 }) |
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342 .on("dragend", function(d) { |
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343 delete dragging[d]; |
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344 transition(d3.select(this)) |
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345 .attr("transform", "translate(" + x(d) + ")"); |
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346 transition(pCoordApp.foreground) |
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347 .attr("d", path); |
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348 pCoordApp.background.attr("d", path) |
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349 .transition() |
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350 .delay(500) |
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351 .duration(0) |
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352 .attr("visibility", null); |
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353 })); |
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354 |
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355 // Add an axis and title. |
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356 g.append("g") |
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357 .attr("class", "axis") |
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358 .each(function(d) { |
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359 d3.select(this).call(axis.scale(y[d])); |
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360 }); |
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361 g.append("g") |
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362 .attr("class", "xlabel") |
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363 .append("text") |
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364 .style("text-anchor", "middle") |
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365 .attr("y", -9) |
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366 .text(function(d) { return d; }); |
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367 |
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368 // Add and store a brush for each axis. |
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369 g.append("g") |
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370 .attr("class", "brush") |
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371 .each(function(d) { d3.select(this).call(y[d].brush = d3.svg.brush().y(y[d]).on("brush", brush)); }) |
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372 .selectAll("rect") |
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373 .attr("x", -8) |
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374 .attr("width", 16); |
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375 |
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376 // Control line opacity. |
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377 $('#pcline_opacity').on('change', (function() { |
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378 var val = $(this).val(); |
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379 $('#plotDiv .foreground path').css('stroke-opacity', val.toString()); |
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380 $('#pcopacity').html((Math.round(val*10000)/100) + "%"); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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381 })); |
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382 }; |
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383 |
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384 var updateParallelForeground = function() { |
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385 pCoordApp.foreground[0].map(function(d) { |
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386 var ln = parseInt(d['__data__']['idx']); |
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387 if ($.inArray(ln, pCoordApp.selectedLines) < 0){ |
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388 d.style.display = "none"; |
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389 } else { |
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390 d.style.display = null; |
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391 } |
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392 }); |
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393 }; |
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394 |
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395 /* |
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396 * Retrieve the data, then call display functions |
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397 */ |
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398 var displayParallelCoordinates = function() { |
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399 pCoordApp.origData = $.extend(true,[], tableContent); |
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400 pCoordApp.headers = Object.keys(pCoordApp.origData[0]); |
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401 pCoordApp.origData.forEach(function(d,idx) { |
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402 d.idx = idx; |
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403 pCoordApp.selectedLines.push(idx); |
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404 pCoordApp.lines.push(idx); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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405 if (!pCoordApp.populations.includes(d.Population)){ |
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406 pCoordApp.populations.push(d.Population); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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407 } |
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408 }); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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409 /* |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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410 * For the plot use only the MFI information |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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411 * for each populations. Store in flowData |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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412 */ |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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413 pCoordApp.flowData = $.extend(true,[],tableContent); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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414 pCoordApp.flowData.forEach(function(d, idx) { |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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415 delete d['Population']; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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416 delete d['Count']; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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417 delete d['Percentage']; |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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418 delete d.Comment; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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419 pCoordApp.allPopulations.push(idx); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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420 pCoordApp.selectedPopulations.push(idx); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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421 pCoordApp.selectedLines.push(idx); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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422 pCoordApp.lines.push(idx); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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423 }); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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424 |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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425 pCoordApp.allLines = pCoordApp.flowData.length; |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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426 displayPopTable(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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427 displayTableGrid(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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428 displayParallelPlot(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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429 |
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430 $("#resetPCoordDisplay").on("click",function() { |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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431 for (var i = 0; i < pCoordApp.allLines; i++) { |
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432 pCoordApp.allPopulations.push(i); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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433 pCoordApp.selectedPopulations.push(i); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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434 pCoordApp.selectedLines.push(i); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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435 pCoordApp.lines.push(i); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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436 } |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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437 $("#popSelectAll").prop('checked',true); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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438 $(".popSelect").prop("checked",true); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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439 |
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440 var opcty = ".8"; |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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441 $('#plotDiv .foreground path').css('stroke-opacity', opcty); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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442 $('#pcopacity').html("80%"); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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443 $('#pcline_opacity').val(0.8); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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444 |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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445 displayPopTable(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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446 displayTableGrid(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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447 displayParallelPlot(); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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448 }); |
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449 |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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450 $(window).on('resize',function() { |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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451 waitForFinalEvent(function() { |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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452 displayAll(); |
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453 }, 500, "resizeParallelCoordinates"); |
b5453d07f740
"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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454 }); |
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"planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flow_overview commit 65373effef15809f3db0e5f9603ef808f4110aa3"
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455 } |