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comparison FCSflowAI.xml @ 3:dd00eee6cd06 draft default tip

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planemo upload for repository https://github.com/ImmPortDB/immport-galaxy-tools/tree/master/flowtools/flowai commit bbff20e20dc2b9dbb40b613a0d5f16ee8132446d
author azomics
date Fri, 29 Sep 2023 07:19:30 +0000
parents fab7c5deeb65
children
comparison
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2:fab7c5deeb65 3:dd00eee6cd06
1 <tool id="flowAI" name="flowAI" version="1.0+galaxy1"> 1 <tool id="flowAI" name="flowAI" version="1.0+galaxy2">
2 <description> automatic quality control</description> 2 <description> automatic quality control</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="1.42.0">bioconductor-flowcore</requirement> 4 <requirement type="package" version="1.42.0">bioconductor-flowcore</requirement>
5 <requirement type="package" version="1.2.9">bioconductor-flowai</requirement> 5 <requirement type="package" version="1.2.9">bioconductor-flowai</requirement>
6 <requirement type="package" version="0.0.1">mscorefonts</requirement>
6 </requirements> 7 </requirements>
7 <stdio> 8 <stdio>
8 <exit_code range="1:" level="fatal" description="See stderr for more details."/> 9 <exit_code range="1:" level="fatal" description="See stderr for more details."/>
9 </stdio> 10 </stdio>
10 <command><![CDATA[ 11 <command><![CDATA[
74 <assert_contents> 75 <assert_contents>
75 <has_n_lines min="100" max="500"/> 76 <has_n_lines min="100" max="500"/>
76 <has_text text="data:image/png;base64"/> 77 <has_text text="data:image/png;base64"/>
77 <has_text text="Dynamic range check"/> 78 <has_text text="Dynamic range check"/>
78 <has_text text="total_UNIQUE"/> 79 <has_text text="total_UNIQUE"/>
79 <has_size value="267939" delta="30000"/> 80 <has_size value="320266" delta="30000"/>
80 </assert_contents> 81 </assert_contents>
81 </output> 82 </output>
82 <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/> 83 <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
83 </test> 84 </test>
84 <test expect_num_outputs="4"> 85 <test expect_num_outputs="4">
96 <assert_contents> 97 <assert_contents>
97 <has_n_lines min="100" max="500"/> 98 <has_n_lines min="100" max="500"/>
98 <has_text text="data:image/png;base64"/> 99 <has_text text="data:image/png;base64"/>
99 <has_text text="Dynamic range check"/> 100 <has_text text="Dynamic range check"/>
100 <has_text text="total_UNIQUE"/> 101 <has_text text="total_UNIQUE"/>
101 <has_size value="267939" delta="30000"/> 102 <has_size value="320266" delta="30000"/>
102 </assert_contents> 103 </assert_contents>
103 </output> 104 </output>
104 <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/> 105 <output name="highfcs" file="std/hqdata.fcs" compare="sim_size"/>
105 <output name="lowfcs" file="std/lqdata.fcs" compare="sim_size"/> 106 <output name="lowfcs" file="std/lqdata.fcs" compare="sim_size"/>
106 <output name="qcfcs" file="std/alldata.fcs" compare="sim_size"/> 107 <output name="qcfcs" file="std/alldata.fcs" compare="sim_size"/>
119 <output name="full_rep"> 120 <output name="full_rep">
120 <assert_contents> 121 <assert_contents>
121 <has_n_lines min="100" max="500"/> 122 <has_n_lines min="100" max="500"/>
122 <has_text text="data:image/png;base64"/> 123 <has_text text="data:image/png;base64"/>
123 <has_text text="Dynamic range check"/> 124 <has_text text="Dynamic range check"/>
124 <has_size value="268106" delta="30000"/> 125 <has_size value="320433" delta="30000"/>
125 </assert_contents> 126 </assert_contents>
126 </output> 127 </output>
127 <output name="highfcs" file="nooutliers/hqdata_nooutliers.fcs" compare="sim_size"/> 128 <output name="highfcs" file="nooutliers/hqdata_nooutliers.fcs" compare="sim_size"/>
128 </test> 129 </test>
129 <test expect_num_outputs="2"> 130 <test expect_num_outputs="2">
141 <assert_contents> 142 <assert_contents>
142 <has_n_lines min="100" max="500"/> 143 <has_n_lines min="100" max="500"/>
143 <has_text text="data:image/png;base64"/> 144 <has_text text="data:image/png;base64"/>
144 <has_text text="Dynamic range check"/> 145 <has_text text="Dynamic range check"/>
145 <has_text text="total_UNIQUE"/> 146 <has_text text="total_UNIQUE"/>
146 <has_size value="267894" delta="30000"/> 147 <has_size value="320220" delta="30000"/>
147 </assert_contents> 148 </assert_contents>
148 </output> 149 </output>
149 <output name="highfcs" file="withsfsc/hqdata_sfsc.fcs" compare="sim_size"/> 150 <output name="highfcs" file="withsfsc/hqdata_sfsc.fcs" compare="sim_size"/>
150 </test> 151 </test>
151 </tests> 152 </tests>