--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/txtDiagnosis.xml	Thu Jul 16 07:35:26 2020 -0400
@@ -0,0 +1,64 @@
+<tool id="txt_diagnosis" name="Check data" version="1.1+galaxy0" profile="18.01">
+   <description> in txt-converted FCS files</description>
+  <requirements>
+    <requirement type="package" version="0.17.1">pandas</requirement>
+  </requirements>
+  <stdio>
+    <exit_code range="1:" />
+  </stdio>
+  <command><![CDATA[
+    python '$__tool_directory__/txtdiagnosis.py' -i '${input}' -o '${output}' -n '${input.name}'
+  ]]>
+  </command>
+  <inputs>
+    <param format="flowtext" name="input" type="data" label="Text file to check"/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="output" label="Report on ${input.name}"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="input_error.txt"/>
+      <output name="output" file="output_error.txt">
+        <assert_contents>
+          <has_text_matching expression="WARNING: line 6 in .* contains non-numeric results"/>
+        </assert_contents>
+      </output>
+    </test>
+    <test>
+      <param name="input" value="input_noerror.txt"/>
+      <output name="output" file="output_noerror.txt">
+        <assert_contents>
+          <has_text text="No errors in the file."/>
+        </assert_contents>
+      </output>
+    </test>
+  </tests>
+  <help><![CDATA[
+   This tool looks for potential errors in txt-converted FCS files.
+-----
+**Input**
+This diagnosis tools reads in text files, and checks that the data is all numeric.
+**Output**
+The output is a report with the errors and corresponding line numbers.
+-----
+**Example**
+*Input*::
+   Marker1 Marker2 Marker3
+   34      45      12
+   NaN     65      10
+   34      45      12
+   33      NaN     10
+   34      45      12
+   33      65      10
+   34      45      12
+   33      65      NaN
+   34      45      12
+   33      65      10
+*Output*::
+   WARNING: line 2 in example_file.txt contains non-numeric results
+   WARNING: line 4 in example_file.txt contains non-numeric results
+   WARNING: line 8 in example_file.txt contains non-numeric results
+  ]]>
+  </help>
+</tool>