Mercurial > repos > immuneml > immuneml_tools

annotate README.rst @ 7:45ca02982e1f draft

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"planemo upload commit 8aef44a2b3bc8fc00a1efe0ce7ecab83eded053f-dirty"
author immuneml
date Tue, 27 Jul 2021 10:27:11 +0000
parents 2d3dd9ff7e84
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1 The tools rely on immuneML version 2.0.1 or newer.
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3 Installation
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4 ============
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5 You will need to define a new datatype ``immuneml_receptors``, which is done as follows:
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7 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set
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9 ``datatypes_config_file: datatypes_conf.xml``
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11 2. Make ``datatypes_conf.xml`` by copying ``datatypes_conf.xml.sample`` unless a ``datatypes_config_file`` was already defined.
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12 3. Add the following line to your ``datatypes_config_file``:
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14 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>``
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15 The line has to be inside ``<registration>`` along with the other datatypes.
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17 The immuneML package
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18 ====================
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19 Conda installation of immuneML typically takes several minutes. There is general information about Galaxy dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html