Mercurial > repos > immuneml > immuneml_tools
comparison README.rst @ 6:2d3dd9ff7e84 draft
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author | immuneml |
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date | Tue, 27 Jul 2021 09:30:50 +0000 |
parents | 48569213d91c |
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1 Dependencies | 1 The tools rely on immuneML version 2.0.1 or newer. |
2 | |
3 Installation | |
2 ============ | 4 ============ |
3 The tools rely on immuneML version 2.0.1 or newer. | |
4 | |
5 Installation: datatype | |
6 ====================== | |
7 You will need to define a new datatype ``immuneml_receptors``, which is done as follows: | 5 You will need to define a new datatype ``immuneml_receptors``, which is done as follows: |
8 | 6 |
9 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set | 7 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set |
10 | 8 |
11 ``datatypes_config_file: datatypes_conf.xml`` | 9 ``datatypes_config_file: datatypes_conf.xml`` |
14 3. Add the following line to your ``datatypes_config_file``: | 12 3. Add the following line to your ``datatypes_config_file``: |
15 | 13 |
16 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>`` | 14 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>`` |
17 The line has to be inside ``<registration>`` along with the other datatypes. | 15 The line has to be inside ``<registration>`` along with the other datatypes. |
18 | 16 |
19 Installation: The immuneML package | 17 The immuneML package |
20 ================================== | 18 ==================== |
21 Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html | 19 Conda installation of immuneML typically takes several minutes. There is general information about Galaxy dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html |