Mercurial > repos > immuneml > immuneml_tools

comparison immuneml_yaml.xml @ 6:2d3dd9ff7e84 draft

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"planemo upload commit 74f2bd15d2b7723c8e5a22d743913706dc7d8333-dirty"
author immuneml
date Tue, 27 Jul 2021 09:30:50 +0000
parents ed3932e6d616
children 45ca02982e1f
comparison
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5:48569213d91c 6:2d3dd9ff7e84
49 `implanting synthetic immune signals <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_simulation>`_ or 49 `implanting synthetic immune signals <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_simulation>`_ or
50 `training <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_train_ml_model>`_ and 50 `training <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_train_ml_model>`_ and
51 `applying <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_apply_ml_model>`_ ML models instead of this tool. 51 `applying <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_apply_ml_model>`_ ML models instead of this tool.
52 These other tools are able to export the relevant output files to Galaxy history elements. 52 These other tools are able to export the relevant output files to Galaxy history elements.
53 53
54 However, when you want to run the `ExploratoryAnalysis <https://docs.immuneml.uio.no/specification.html#exploratoryanalysis>`_ instruction, 54 However, when you want to run the `ExploratoryAnalysis <https://docs.immuneml.uio.no/latest/specification.html#exploratoryanalysis>`_ instruction,
55 or other analyses that do not have a corresponding Galaxy tool, this generic tool can be used. 55 or other analyses that do not have a corresponding Galaxy tool, this generic tool can be used.
56 56
57 For the exhaustive documentation of this tool and an example YAML specification for exploratory analysis, see the tutorial `How to run any AIRR ML analysis in Galaxy <https://docs.immuneml.uio.no/galaxy/galaxy_general_yaml.html>`_. 57 For the exhaustive documentation of this tool and an example YAML specification for exploratory analysis, see the tutorial `How to run any AIRR ML analysis in Galaxy <https://docs.immuneml.uio.no/latest/galaxy/galaxy_general_yaml.html>`_.
58 58
59 59
60 **Tool output** 60 **Tool output**
61 61
62 This Galaxy tool will produce the following history elements: 62 This Galaxy tool will produce the following history elements: