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comparison immuneml_simulate_events.xml @ 7:45ca02982e1f draft

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"planemo upload commit 8aef44a2b3bc8fc00a1efe0ce7ecab83eded053f-dirty"
author immuneml
date Tue, 27 Jul 2021 10:27:11 +0000
parents 2d3dd9ff7e84
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6:2d3dd9ff7e84 7:45ca02982e1f
35 This Galaxy tool can be used to implant short disease-associated motifs into an existing Repertoire dataset. 35 This Galaxy tool can be used to implant short disease-associated motifs into an existing Repertoire dataset.
36 Such a dataset with simulated immune signals can be used to benchmark different ML methods. 36 Such a dataset with simulated immune signals can be used to benchmark different ML methods.
37 Any type of repertoire dataset (experimental or simulated) can be used as a starting point for an immune event simulation, as long as it contains amino acid sequences. 37 Any type of repertoire dataset (experimental or simulated) can be used as a starting point for an immune event simulation, as long as it contains amino acid sequences.
38 38
39 If you instead want to simulate a synthetic dataset from scratch, start with the 39 If you instead want to simulate a synthetic dataset from scratch, start with the
40 tool `Simulate a synthetic immune receptor or repertoire dataset <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_simulate_dataset>`_. 40 tool `Simulate a synthetic immune receptor or repertoire dataset <root?tool_id=immuneml_simulate_dataset>`_.
41 41
42 For the exhaustive documentation of this tool and an example YAML specification, see the tutorial `How to simulate immune events into an existing AIRR dataset in Galaxy <https://docs.immuneml.uio.no/latest/galaxy/galaxy_simulate_signals.html>`_. 42 For the exhaustive documentation of this tool and an example YAML specification, see the tutorial `How to simulate immune events into an existing AIRR dataset in Galaxy <https://docs.immuneml.uio.no/latest/galaxy/galaxy_simulate_signals.html>`_.
43 43
44 **Tool output** 44 **Tool output**
45 45