Mercurial > repos > immuneml > immuneml_tools

comparison immuneml_yaml.xml @ 7:45ca02982e1f draft

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"planemo upload commit 8aef44a2b3bc8fc00a1efe0ce7ecab83eded053f-dirty"
author immuneml
date Tue, 27 Jul 2021 10:27:11 +0000
parents 2d3dd9ff7e84
children e33b3d370124
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6:2d3dd9ff7e84 7:45ca02982e1f
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44 This Galaxy tool can be used to run any possible YAML-based immuneML analysis in Galaxy. 44 This Galaxy tool can be used to run any possible YAML-based immuneML analysis in Galaxy.
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46 It is typically recommended to use the analysis-specific Galaxy tools for 46 It is typically recommended to use the analysis-specific Galaxy tools for
47 `creating datasets <https://galaxy.immuneml.uio.no/root?tool_id=immune_ml_dataset>`_, 47 `creating datasets <root?tool_id=immune_ml_dataset>`_,
48 `simulating synthetic data <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_simulate_dataset>`_, 48 `simulating synthetic data <root?tool_id=immuneml_simulate_dataset>`_,
49 `implanting synthetic immune signals <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_simulation>`_ or 49 `implanting synthetic immune signals <root?tool_id=immuneml_simulation>`_ or
50 `training <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_train_ml_model>`_ and 50 `training <root?tool_id=immuneml_train_ml_model>`_ ML models instead of this tool.
51 `applying <https://galaxy.immuneml.uio.no/root?tool_id=immuneml_apply_ml_model>`_ ML models instead of this tool.
52 These other tools are able to export the relevant output files to Galaxy history elements. 51 These other tools are able to export the relevant output files to Galaxy history elements.
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54 However, when you want to run the `ExploratoryAnalysis <https://docs.immuneml.uio.no/latest/specification.html#exploratoryanalysis>`_ instruction, 53 However, when you want to run the `ExploratoryAnalysis <https://docs.immuneml.uio.no/latest/specification.html#exploratoryanalysis>`_ instruction,
55 or other analyses that do not have a corresponding Galaxy tool, this generic tool can be used. 54 or other analyses that do not have a corresponding Galaxy tool, this generic tool can be used.
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