Mercurial > repos > immuneml > immuneml_tools
comparison README.md @ 5:48569213d91c draft
"planemo upload commit 49b58953ab7eec02a6917044be672ad9a65eab5c-dirty"
| author | immuneml |
|---|---|
| date | Fri, 02 Jul 2021 11:04:53 +0000 |
| parents | ed3932e6d616 |
| children | 2d3dd9ff7e84 |
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| 4:697bb1a18bc7 | 5:48569213d91c |
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| 1 # immuneml_tools | 1 # immuneml_tools |
| 2 Galaxy tool wrappers for immuneML. | 2 Galaxy tool wrappers for immuneML. The tools rely on immuneML version 2.0.1 or newer. |
| 3 | |
| 3 https://immuneml.uio.no/ | 4 https://immuneml.uio.no/ |
| 4 | 5 |
| 5 ## Installation: | 6 ## Installation: |
| 6 The tools can be installed from a Galaxy toolshed. You can also install them offline by editing Galaxy config files in the usual way. | 7 The tools can be installed from a Galaxy toolshed. You can also install them offline by editing Galaxy config files in the usual way. |
| 7 | 8 |
| 17 ``` | 18 ``` |
| 18 <datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/> | 19 <datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/> |
| 19 ``` | 20 ``` |
| 20 The line has to be inside `<registration>` along with the other datatypes. | 21 The line has to be inside `<registration>` along with the other datatypes. |
| 21 | 22 |
| 22 ### The immuneML conda package | 23 ### The immuneML package |
| 23 Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes. | 24 Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html |