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comparison README.rst @ 5:48569213d91c draft

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"planemo upload commit 49b58953ab7eec02a6917044be672ad9a65eab5c-dirty"
author immuneml
date Fri, 02 Jul 2021 11:04:53 +0000
parents ed3932e6d616
children 2d3dd9ff7e84
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1 Installation 1 Dependencies
2 ============ 2 ============
3 The tools rely on immuneML version 2.0.1 or newer.
4
5 Installation: datatype
6 ======================
3 You will need to define a new datatype ``immuneml_receptors``, which is done as follows: 7 You will need to define a new datatype ``immuneml_receptors``, which is done as follows:
4 8
5 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set 9 1. In your ``galaxy.yml`` look up the name of your ``datatypes_config_file``. If the name is not yet defined, set
6 10
7 ``datatypes_config_file: datatypes_conf.xml`` 11 ``datatypes_config_file: datatypes_conf.xml``
10 3. Add the following line to your ``datatypes_config_file``: 14 3. Add the following line to your ``datatypes_config_file``:
11 15
12 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>`` 16 ``<datatype extension="immuneml_receptors" type="galaxy.datatypes.text:Html" subclass="True"/>``
13 The line has to be inside ``<registration>`` along with the other datatypes. 17 The line has to be inside ``<registration>`` along with the other datatypes.
14 18
15 The immuneML conda package 19 Installation: The immuneML package
16 ========================== 20 ==================================
17 Galaxy will need to install the immuneML conda package. This conda installation typically takes several minutes. 21 Conda installation of immuneML typically takes several minutes. There is general information about Galaxy's dependency resolution here: https://docs.galaxyproject.org/en/release_20.05/admin/conda_faq.html