Mercurial > repos > immuneml > immuneml_tools
comparison immuneml_train_recept.xml @ 16:cd57c1c66f8b draft
"planemo upload commit 60f280176ecdc2883fc7e85deb9aaa151f7c2088"
| author | immuneml |
|---|---|
| date | Wed, 05 Jan 2022 09:53:02 +0000 |
| parents | 45ca02982e1f |
| children | 051d349fdc8c |
comparison
equal
deleted
inserted
replaced
| 15:e33b3d370124 | 16:cd57c1c66f8b |
|---|---|
| 48 && mv ${html_outfile.files_path}/immuneML_output.zip $archive | 48 && mv ${html_outfile.files_path}/immuneML_output.zip $archive |
| 49 && mv ${html_outfile.files_path}/exported_models/*.zip ${optimal_model} | 49 && mv ${html_outfile.files_path}/exported_models/*.zip ${optimal_model} |
| 50 ]]> | 50 ]]> |
| 51 </command> | 51 </command> |
| 52 <inputs> | 52 <inputs> |
| 53 <param name="iml_input" type="data" format="immuneml_receptors" label="Input dataset (immune receptors)" help="This field accepts receptor datasets in the ImmuneML dataset format, as created by the Create Dataset tool."/> | 53 <param name="iml_input" type="data" format="immuneml_receptors" label="immuneML dataset (immune receptors)" help="This field accepts receptor datasets in the ImmuneML dataset format, as created by the Create Dataset tool."/> |
| 54 <param type="text" name="labels" optional="false" label="Which property (“label”) of the receptors would you like to predict?" help="A receptor property to predict could for example be the epitope it binds to. Such properties must be present as receptor sequence metadata. For example, when using data in VDJdb format, the default fields are named ‘epitope’, ‘epitope_gene’ and ‘epitope_species’. One of these labels must be chosen here."/> | 54 <param type="text" name="labels" optional="false" label="Which property (“label”) of the receptors would you like to predict?" help="A receptor property to predict could for example be the epitope it binds to. Such properties must be present as receptor sequence metadata. For example, when using data in VDJdb format, the default fields are named ‘epitope’, ‘epitope_gene’ and ‘epitope_species’. One of these labels must be chosen here."/> |
| 55 | 55 |
| 56 <conditional name="gap_cond"> | 56 <conditional name="gap_cond"> |
| 57 <param type="select" name="gap_type" label="The immune receptors will be classified based on subsequences found in the CDR3 region. I assume that the signal that determines the receptor label is:" display="radio"> | 57 <param type="select" name="gap_type" label="The immune receptors will be classified based on subsequences found in the CDR3 region. I assume that the signal that determines the receptor label is:" display="radio"> |
| 58 <option value="ungapped">A contiguous subsequence of amino acids</option> | 58 <option value="ungapped">A contiguous subsequence of amino acids</option> |