Mercurial > repos > in_silico > cravat_annotate_mutations
comparison cravat_annotate/cravat_annotate.xml @ 24:2b7ba092ce34 draft
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| author | in_silico |
|---|---|
| date | Wed, 18 Jul 2018 09:42:05 -0400 |
| parents | c5b3d80c43e6 |
| children |
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| 23:3404770b5b7a | 24:2b7ba092ce34 |
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| 1 <tool id="cravat_query" name="CRAVAT Query" version="1.0.0"> | |
| 2 <description>Queries CRAVAT for cancer annotation</description> | |
| 3 <command interpreter="python">cravat_annotate.py -i $input -o $output</command> | |
| 4 | |
| 5 <inputs> | |
| 6 <param format="tabular" name="input" type="data" label="Source file"/> | |
| 7 </inputs> | |
| 8 | |
| 9 <outputs> | |
| 10 <data format="tabular" name="output" /> | |
| 11 </outputs> | |
| 12 | |
| 13 <tests> | |
| 14 <test> | |
| 15 <param name="input" value="input_call.txt"/> | |
| 16 <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/> | |
| 17 </test> | |
| 18 </tests> | |
| 19 | |
| 20 <help> | |
| 21 This tool queries CRAVAT for cancer annotation. | |
| 22 </help> | |
| 23 | |
| 24 </tool> | |
| 25 |