Mercurial > repos > in_silico > cravat_annotate_mutations

comparison cravat_convert/base_converter.py @ 19:ec55c91879e8 draft

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author in_silico
date Tue, 12 Jun 2018 14:06:10 -0400
parents 4b860b1f92fa
children
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18:dd9181024296 19:ec55c91879e8
1 class BaseConverter(object):
2 def __init__(self):
3 self.format_name = None
4 def check_format(self,*args,**kwargs):
5 err_msg = 'Converter for %s format has no method check_format' %\
6 self.format_name
7 raise NotImplementedError(err_msg)
8 def setup(self,*args,**kwargs):
9 err_msg = 'Converter for %s format has no method setup' %\
10 self.format_name
11 raise NotImplementedError(err_msg)
12 def convert_line(self,*args,**kwargs):
13 err_msg = 'Converter for %s format has no method convert_line' %\
14 self.format_name
15 raise NotImplementedError(err_msg)
16
17
18 class BadFormatError(Exception):
19 def __init__(self, message, errors=None):
20 super(BadFormatError, self).__init__(message)
21 # Support for custom error codes, if added later
22 self.errors = errors