Mercurial > repos > in_silico > cravat_annotate_mutations
view cravat_convert/base_converter.py @ 14:a28f1f52eb93 draft
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author | in_silico |
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date | Tue, 12 Jun 2018 12:04:45 -0400 |
parents | 4b860b1f92fa |
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class BaseConverter(object): def __init__(self): self.format_name = None def check_format(self,*args,**kwargs): err_msg = 'Converter for %s format has no method check_format' %\ self.format_name raise NotImplementedError(err_msg) def setup(self,*args,**kwargs): err_msg = 'Converter for %s format has no method setup' %\ self.format_name raise NotImplementedError(err_msg) def convert_line(self,*args,**kwargs): err_msg = 'Converter for %s format has no method convert_line' %\ self.format_name raise NotImplementedError(err_msg) class BadFormatError(Exception): def __init__(self, message, errors=None): super(BadFormatError, self).__init__(message) # Support for custom error codes, if added later self.errors = errors