# HG changeset patch # User in_silico # Date 1500490194 14400 # Node ID 1b6e23f3cb06314f878db948689712771d67fb02 # Parent 6f4223b8a428a12c86938961c3b507e01f757839 Uploaded diff -r 6f4223b8a428 -r 1b6e23f3cb06 cravat_annotate_mutations-18ce5c6169ef/cravat_annotate.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cravat_annotate_mutations-18ce5c6169ef/cravat_annotate.xml Wed Jul 19 14:49:54 2017 -0400 @@ -0,0 +1,23 @@ +<tool id="cravat_query" name="CRAVAT Query" version="1.0.0"> + <description>Queries CRAVAT for cancer annotation</description> + <command interpreter="python">cravat_annotate.py $input $output</command> + <inputs> + <param format="tabular" name="input" type="data" label="Source file"/> + </inputs> + <outputs> + <data format="tabular" name="output" /> + </outputs> + + <tests> + <test> + <param name="input" value="input_call.txt"/> + <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/> + </test> + </tests> + + <help> + This tool queries CRAVAT for cancer annotation. + </help> + +</tool> +