Mercurial > repos > in_silico > cravat_vcf_convert

annotate cravat_annotate/cravat_annotate.xml @ 23:f8703ba30180 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author in_silico
date Wed, 18 Jul 2018 10:25:17 -0400
parents 5de40a6dd491
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
19
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
1 <tool id="cravat_query" name="CRAVAT Query" version="1.0.0">
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
2 <description>Queries CRAVAT for cancer annotation</description>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
3 <command interpreter="python">cravat_annotate.py -i $input -o $output</command>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
4
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
5 <inputs>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
6 <param format="tabular" name="input" type="data" label="Source file"/>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
7 </inputs>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
8
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
9 <outputs>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
10 <data format="tabular" name="output" />
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
11 </outputs>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
12
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
13 <tests>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
14 <test>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
15 <param name="input" value="input_call.txt"/>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
16 <output name="output" file="Galaxy23-[CRAVAT_Query_on_data_22].tabular"/>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
17 </test>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
18 </tests>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
19
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
20 <help>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
21 This tool queries CRAVAT for cancer annotation.
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
22 </help>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
23
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
24 </tool>
5de40a6dd491 Uploaded
in_silico
parents:
diff changeset
25