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comparison cravat/cravat.py @ 1:c13857bac2c4 draft default tip

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Updated for new CRAVAT server.
author insilicosolutions
date Tue, 08 Mar 2016 16:07:46 -0500
parents 9e29dd2972ab
children
comparison
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0:9e29dd2972ab 1:c13857bac2c4
9 return True 9 return True
10 else: 10 else:
11 return False 11 return False
12 12
13 def query (line): 13 def query (line):
14 url = query_url + '?mutation=' + '_'.join(line.split()) 14 url = query_url
15 r = requests.get(url) 15 params = {'mutation': '_'.join(line.split())}
16 r = requests.get(url, params=params)
16 annot = r.json() 17 annot = r.json()
17 return annot 18 return annot
18 19
19 query_url = 'http://staging.cravat.us/rest/service/query' 20 query_url = 'http://www.cravat.us/rest/service/query'
20 21
21 first_headers = ['ID', 22 first_headers = ['ID',
22 'Chromosome', 23 'Chromosome',
23 'Position', 24 'Position',
24 'Strand', 25 'Strand',