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Update to protk 1.2.2
author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:13:09 -0500
parents dac478a72c1d
children
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1:dac478a72c1d 2:c25df71f7b68
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="galaxy_protk" version="1.2.0"> 3 <package name="galaxy_protk" version="1.2.2">
4 <install version="1.0"> 4 <install version="1.0">
5 <actions> 5 <actions>
6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> 6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
7 <action type="shell_command">sh install_protk.sh 1.2.0</action> 7 <action type="shell_command">sh install_protk.sh 1.2.2</action>
8 <action type="move_file"> 8 <action type="move_file">
9 <source>install_protk.sh</source> 9 <source>install_protk.sh</source>
10 <destination>$INSTALL_DIR</destination> 10 <destination>$INSTALL_DIR</destination>
11 </action> 11 </action>
12 <action type="set_environment"> 12 <action type="set_environment">
16 </actions> 16 </actions>
17 </install> 17 </install>
18 <readme> 18 <readme>
19 This package installs the protk rubygem which provides facilities for running various proteomics tools via galaxy. 19 This package installs the protk rubygem which provides facilities for running various proteomics tools via galaxy.
20 20
21 Installation of this package requires that you have the following packages (or equivalents) installed gcc g++ patch zlib zlib-devel libyaml-devel libffi-devel openssl-devel make bzip2 autoconf automake libtool bison iconv-devel libxml2 libxml2-devel zlib zlib-devel bzip2 make
22
23 For more about protk see https://bitbucket.org/iracooke/protk 21 For more about protk see https://bitbucket.org/iracooke/protk
24
25 In order to install ruby and the protk rubygem this package will install rvm (http://rvm.io) to the home directory of your galaxy user at ~/.rvm (if rvm is not already installed).
26 The protk rubygem is installed in its own gemset and will not interfere with other ruby installations or ruby gems
27 </readme> 22 </readme>
28 </package> 23 </package>
29 </tool_dependency> 24 </tool_dependency>