Mercurial > repos > iracooke > make_protein_decoys

comparison make_decoy.xml @ 1:354e820eb485 draft

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Docker support and update for protk 1.4
author iracooke
date Thu, 26 Mar 2015 21:27:53 -0400
parents a90539d8e409
children bd4844c664f2
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0:a90539d8e409 1:354e820eb485
1 <tool id="make_decoy" name="Generate protein decoy sequences" version="1.0.0"> 1 <tool id="make_decoy" name="Generate protein decoy sequences" version="1.0.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.3">protk</requirement> 3 <container type="docker">iracooke/protk-1.4.1</container>
4 <requirement type="package" version="1.4">protk</requirement>
4 </requirements> 5 </requirements>
5 6
6 <description> 7 <description>
7 Generate random protein sequences with the same AA composition as input sequences 8 Generate random protein sequences with the same AA composition as input sequences
8 </description> 9 </description>
23 24
24 <outputs> 25 <outputs>
25 <data format="fasta" name="output" /> 26 <data format="fasta" name="output" />
26 </outputs> 27 </outputs>
27 28
29 <tests>
30 <test>
31 <param name="fasta_file" value="testdb.fasta" format="fasta"/>
32 <output name="output" format="fasta">
33 <assert_contents>
34 <has_text text="decoy_rp3" />
35 </assert_contents>
36 </output>
37 </test>
38 </tests>
39
40
28 41
29 <help> 42 <help>
30 43
31 **What it does** 44 **What it does**
32 45