Mercurial > repos > iracooke > mascot
comparison mascot_to_pepxml.xml @ 4:d9564913a944
Uploaded
| author | iracooke |
|---|---|
| date | Tue, 05 Mar 2013 00:18:41 -0500 |
| parents | 579b1f9146b4 |
| children | 327b2d99d4c5 |
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| 3:1747d568a7c8 | 4:d9564913a944 |
|---|---|
| 1 <tool id="mascot_to_pepxml_1" name="Mascot to pepXML" version="1.0.0"> | 1 <tool id="mascot_to_pepxml_1" name="Mascot to pepXML" version="1.0.1"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package" version="1.1.9">galaxy_protk</requirement> | 3 <requirement type="package" version="1.2.0">galaxy_protk</requirement> |
| 4 <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> | 4 <requirement type="package" version="4.6.1">trans_proteomic_pipeline</requirement> |
| 5 </requirements> | 5 </requirements> |
| 6 | 6 |
| 7 <description>Converts a mascot results file to pepXML</description> | 7 <description>Converts a mascot results file to pepXML</description> |
| 8 | 8 |
| 9 <command>rvm 1.9.3@protk-1.1.9 do mascot_to_pepxml.rb $input_file -o $output -d $database</command> | 9 <command>rvm 1.9.3@protk-1.2.0 do mascot_to_pepxml.rb $input_file -o $output -d $database</command> |
| 10 <inputs> | 10 <inputs> |
| 11 | 11 |
| 12 <param name="input_file" type="data" format="mascotdat" multiple="false" label="Input File" help="Mascot results file"/> | 12 <param name="input_file" type="data" format="mascotdat" multiple="false" label="Input File" help="Mascot results file"/> |
| 13 <param name="database" type="select" format="text" > | 13 <param name="database" type="select" format="text" > |
| 14 <label>Database</label> | 14 <label>Database</label> |