Mercurial > repos > iracooke > msgfplus

annotate tool-data/pepxml_databases.loc.sample @ 10:86daefc0e88d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iracooke
date Fri, 13 Jun 2014 18:36:52 -0400
parents 1049de3f4aed
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
1 #This file lists the names of protein databases installed locally in protk.
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
2 # These are used by omssa and x!tandem as well as the "mascot to pepxml" tool
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
3 # In order to combine search results with Interprophet searches must be run against an identical database
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
4 #
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
5 # Entries should follow the be structured as follows
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
6 # Display_name omssa_tandem_dbname dbkey
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
7 #
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
8 #
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
9 Swissprot spall_ spall spall_
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
10 Combined PlasmboDB (falciparum) and Swissprot Human plasmodb_pfalciparum_sphuman_ plasmodb_pfalciparum_sphuman plasmodb_pfalciparum_sphuman_
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
11 Swissprot Human sphuman_ sphuman sphuman_
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
12 Combined Swissprot/TRembl Human sptrhuman_ sptrhuman sptrhuman_
1049de3f4aed Uploaded
iracooke
parents:
diff changeset
13 Swissprot Mouse spmouse_ spmouse spmouse_