comparison tool-data/pepxml_databases.loc.sample @ 0:1049de3f4aed

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author iracooke
date Sun, 06 Jan 2013 20:06:08 -0500
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1 #This file lists the names of protein databases installed locally in protk.
2 # These are used by omssa and x!tandem as well as the "mascot to pepxml" tool
3 # In order to combine search results with Interprophet searches must be run against an identical database
4 #
5 # Entries should follow the be structured as follows
6 # Display_name omssa_tandem_dbname dbkey
7 #
8 #
9 Swissprot spall_ spall spall_
10 Combined PlasmboDB (falciparum) and Swissprot Human plasmodb_pfalciparum_sphuman_ plasmodb_pfalciparum_sphuman plasmodb_pfalciparum_sphuman_
11 Swissprot Human sphuman_ sphuman sphuman_
12 Combined Swissprot/TRembl Human sptrhuman_ sptrhuman sptrhuman_
13 Swissprot Mouse spmouse_ spmouse spmouse_