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9
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1 <?xml version="1.0"?>
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2 <datatypes>
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3 <datatype_files>
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4 <datatype_file name="proteomics.py"/>
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5 </datatype_files>
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6 <registration display_path="display_applications">
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7 <datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="true" />
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8 <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true">
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9 <display file="proteomics/PepXml.xml" />
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10 </datatype>
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11 <datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
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12 <display file="proteomics/PepXml.xml" />
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13 </datatype>
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14 <datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
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15 <display file="proteomics/PepXml.xml" />
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16 </datatype>
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17 <datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true">
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18 <display file="proteomics/PepXml.xml" />
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19 </datatype>
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20 <datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true" >
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21 <display file="proteomics/ProtXml.xml"/>
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22 </datatype>
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14
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23 <datatype extension="trafoxml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"
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24 subclass="True" display_in_upload="True" description="Transformationen of retention times"/>
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25 <datatype extension="qcml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml"
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26 subclass="True" display_in_upload="True" description="Quality control data in XML format (https://code.google.com/p/qcml/)."/>
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9
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27 <datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true" />
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28 <datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true" />
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29 <datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false" />
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30 <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true">
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31 <display file="proteomics/mzML.xml"/>
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32 <display file="proteomics/protvis_mzml.xml"/>
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33 </datatype>
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34 <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true" />
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35 <datatype extension="idpdb" type="galaxy.datatypes.proteomics:IdpDB" display_in_upload="true" />
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36 <datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true" />
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37 <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true" />
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38 <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true" />
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39 <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true" />
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40 <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true" />
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41 <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true" />
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42 <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true" />
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43 <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true" />
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11
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44 <datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true" />
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9
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45 <datatype extension="raw" type="galaxy.datatypes.proteomics:RAW" mimetype="application/octet-stream" display_in_upload="true" />
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46 <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true" />
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47 <datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true" />
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48 <datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true" />
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49 </registration>
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50 <sniffers>
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51 <sniffer type="galaxy.datatypes.proteomics:MzML"/>
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13
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52 <sniffer type="galaxy.datatypes.proteomics:TandemXML"/>
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9
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53 <sniffer type="galaxy.datatypes.proteomics:PepXml"/>
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54 <sniffer type="galaxy.datatypes.proteomics:Mgf"/>
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55 <sniffer type="galaxy.datatypes.proteomics:ProtXML"/>
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56 <sniffer type="galaxy.datatypes.proteomics:MzXML"/>
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57 <sniffer type="galaxy.datatypes.proteomics:TraML"/>
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58 <sniffer type="galaxy.datatypes.proteomics:MzIdentML"/>
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59 <sniffer type="galaxy.datatypes.proteomics:MzQuantML"/>
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60 </sniffers>
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61 </datatypes>
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