Mercurial > repos > iracooke > proteomics_datatypes

comparison pepxml_to_table.xml @ 1:84c6c70a4e5a

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Uploaded
author iracooke
date Mon, 04 Mar 2013 01:56:32 -0500
parents c10a62c886b8
children f74290b136fc
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0:c10a62c886b8 1:84c6c70a4e5a
2 <requirements><requirement type="package">protkgem</requirement></requirements> 2 <requirements><requirement type="package">protkgem</requirement></requirements>
3 <description>Converts a pepXML file to a tab delimited text file</description> 3 <description>Converts a pepXML file to a tab delimited text file</description>
4 4
5 5
6 <!-- Note .. the input file is assumed to be the first argument --> 6 <!-- Note .. the input file is assumed to be the first argument -->
7 <command>pepxml_to_table.rb $input_file -o $output</command> 7 <command>rvm 1.9.3@protk-1.1.9 do pepxml_to_table.rb $input_file -o $output</command>
8 8
9 9
10 <inputs> 10 <inputs>
11 11
12 <param name="input_file" type="data" format="pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/> 12 <param name="input_file" type="data" format="pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/>