Mercurial > repos > iracooke > proteomics_datatypes
diff pepxml_to_table.xml @ 0:c10a62c886b8
Uploaded
author | iracooke |
---|---|
date | Sun, 06 Jan 2013 19:07:22 -0500 |
parents | |
children | 84c6c70a4e5a |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/pepxml_to_table.xml Sun Jan 06 19:07:22 2013 -0500 @@ -0,0 +1,23 @@ +<tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0"> + <requirements><requirement type="package">protkgem</requirement></requirements> + <description>Converts a pepXML file to a tab delimited text file</description> + + +<!-- Note .. the input file is assumed to be the first argument --> +<command>pepxml_to_table.rb $input_file -o $output</command> + + +<inputs> + + <param name="input_file" type="data" format="pepxml,peptideprophet_pepxml,interprophet_pepxml" multiple="false" label="Input File" help="A pepXML file"/> + +</inputs> +<outputs> + <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" /> +</outputs> + +<help> + Convert a pepXML file to Tab delimited text +</help> + +</tool>