Mercurial > repos > iracooke > protk
comparison tool-data/pepxml_databases.loc.sample @ 2:418f42b34049 draft
Reuploading
| author | iracooke |
|---|---|
| date | Mon, 23 Jul 2012 00:20:58 -0400 |
| parents | a929e27eb203 |
| children |
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| 1:deaedec14cc8 | 2:418f42b34049 |
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| 1 #This file lists the names of protein databases installed locally in protk. | |
| 2 # These are used by omssa and x!tandem as well as the "mascot to pepxml" tool | |
| 3 # In order to combine search results with Interprophet searches must be run against an identical database | |
| 4 # | |
| 5 # Entries should follow the be structured as follows | |
| 6 # Display_name omssa_tandem_dbname dbkey | |
| 7 # | |
| 8 # | |
| 9 Swissprot spall_ spall spall_ | |
| 10 Combined PlasmboDB (falciparum) and Swissprot Human plasmodb_pfalciparum_sphuman_ plasmodb_pfalciparum_sphuman plasmodb_pfalciparum_sphuman_ | |
| 11 Swissprot Human sphuman_ sphuman sphuman_ | |
| 12 Combined Swissprot/TRembl Human sptrhuman_ sptrhuman sptrhuman_ | |
| 13 Swissprot Mouse spmouse_ spmouse spmouse_ |