Mercurial > repos > iracooke > protk
comparison mzml_to_mgf.xml @ 0:a929e27eb203 draft
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| author | iracooke |
|---|---|
| date | Thu, 21 Jun 2012 22:30:48 -0400 |
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| -1:000000000000 | 0:a929e27eb203 |
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| 1 <tool id="mzml_to_mgf_1" name="MzML to mgf" version="1.0.0"> | |
| 2 <requirements> | |
| 3 <requirement type="package">protk</requirement> | |
| 4 </requirements> | |
| 5 | |
| 6 <description>Converts an mzML file to mgf suitable for searching by omssa</description> | |
| 7 | |
| 8 <command>file_convert.rb $input_file -o $output $maldi</command> | |
| 9 | |
| 10 <inputs> | |
| 11 | |
| 12 <param name="input_file" type="data" format="mzml" multiple="false" label="Input File" help="Line Spectra in mzML format"/> | |
| 13 <param name="maldi" type="boolean" label="Is the data from a MALDI instrument" truevalue="-l" falsevalue=""/> | |
| 14 | |
| 15 </inputs> | |
| 16 | |
| 17 <outputs> | |
| 18 <data format="mgf" name="output" metadata_source="input_file" label="${input_file.display_name}.mgf" from_work_dir="converted.mgf"/> | |
| 19 </outputs> | |
| 20 | |
| 21 <help> | |
| 22 Convert line spectra to Mascot Generic Format | |
| 23 </help> | |
| 24 | |
| 25 </tool> |