Mercurial > repos > iracooke > protk
comparison pepxml_to_table.xml @ 0:a929e27eb203 draft
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| author | iracooke |
|---|---|
| date | Thu, 21 Jun 2012 22:30:48 -0400 |
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| -1:000000000000 | 0:a929e27eb203 |
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| 1 <tool id="pepxml_to_table_1" name="PepXML to Table" version="1.0.0"> | |
| 2 <requirements><requirement type="package">protk</requirement></requirements> | |
| 3 <description>Converts a pepXML file to a tab delimited text file</description> | |
| 4 | |
| 5 | |
| 6 <!-- Note .. the input file is assumed to be the first argument --> | |
| 7 <command>pepxml_to_table.rb $input_file -o $output</command> | |
| 8 | |
| 9 | |
| 10 <inputs> | |
| 11 | |
| 12 <param name="input_file" type="data" format="pepxml" multiple="false" label="Input File" help="A pepXML file"/> | |
| 13 | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="csv" name="output" metadata_source="input_file" label="${input_file.display_name}.csv" /> | |
| 17 </outputs> | |
| 18 | |
| 19 <help> | |
| 20 Convert a pepXML file to Tab delimited text | |
| 21 </help> | |
| 22 | |
| 23 </tool> |