# HG changeset patch
# User Ira Cooke <iracooke@gmail.com>
# Date 1370783785 18000
# Node ID 75a2edcb6d0ccfafb29d8f3a90321f28ecfdf8d4
# Parent  21c7f6a61d610c71e3d320708a1b9047c686a01a
Update

diff -r 21c7f6a61d61 -r 75a2edcb6d0c repository_dependencies.xml
--- a/repository_dependencies.xml	Tue Mar 05 00:01:44 2013 -0500
+++ b/repository_dependencies.xml	Sun Jun 09 08:16:25 2013 -0500
@@ -3,8 +3,6 @@
      <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/>
 </repositories>
  -->
-
-
- <repositories description="Requires the protk rubygem to install MSGF+">
-     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d"/>
-</repositories>
\ No newline at end of file
+<repositories description="Requires the protk rubygem to install MSGF+">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68"/>
+</repositories>
diff -r 21c7f6a61d61 -r 75a2edcb6d0c tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Mar 05 00:01:44 2013 -0500
+++ b/tool_dependencies.xml	Sun Jun 09 08:16:25 2013 -0500
@@ -1,10 +1,13 @@
 <?xml version="1.0"?>
 <tool_dependency>
+    <package name="galaxy_protk" version="1.2.2">
+         <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
+    </package>
     <package name="msgfplus" version="20130227">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
-                <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.2.0</action>
+                <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.2.2</action>
                 <action type="move_file">
                     <source>install_msgfplus.sh</source>
                     <destination>$INSTALL_DIR</destination>
@@ -20,4 +23,4 @@
         </readme>
     </package>
 
-</tool_dependency>
\ No newline at end of file
+</tool_dependency>