# HG changeset patch
# User iracooke
# Date 1362459599 18000
# Node ID a8ae51506967444a41438e00ec03f63f32a56733
# Parent  87757d28e0d27ad80ca3673a1d050f1eca6b9c11
Updated dependency info

diff -r 87757d28e0d2 -r a8ae51506967 README
--- a/README	Mon Mar 04 21:43:23 2013 -0500
+++ b/README	Mon Mar 04 23:59:59 2013 -0500
@@ -1,6 +1,42 @@
-This package is an installer for the MSGF+ search tool.
+This package is an installer for BLAST+ from NCBI
+
+Requirements:
+This package depends on the galaxy_protk package
+Please see instructions for the galaxy_protk package before installing
+
+-------- ABOUT --------------
+
+BLAST Command Line Applications
+
+The NCBI Basic Local Alignment Search Tool (BLAST) finds regions of
+local similarity between sequences. The program compares nucleotide or
+protein sequences to sequence databases and calculates the statistical
+significance of matches. BLAST can be used to infer functional and
+evolutionary relationships between sequences as well as help identify
+members of gene families.
+
+For more information, visit http://blast.ncbi.nlm.nih.gov
+
 
-System Requirements. Ensure that you have the following packages installed on your system
-- unzip
-- java runtime 6 or higher
+-------- LICENCE ------------
+
+
+                            PUBLIC DOMAIN NOTICE
+               National Center for Biotechnology Information
 
+  This software/database is a "United States Government Work" under the
+  terms of the United States Copyright Act.  It was written as part of
+  the author's official duties as a United States Government employee and
+  thus cannot be copyrighted.  This software/database is freely available
+  to the public for use. The National Library of Medicine and the U.S.
+  Government have not placed any restriction on its use or reproduction.
+
+  Although all reasonable efforts have been taken to ensure the accuracy
+  and reliability of the software and data, the NLM and the U.S.
+  Government do not and cannot warrant the performance or results that
+  may be obtained by using this software or data. The NLM and the U.S.
+  Government disclaim all warranties, express or implied, including
+  warranties of performance, merchantability or fitness for any particular
+  purpose.
+
+  Please cite the author in any work or product based on this material.
diff -r 87757d28e0d2 -r a8ae51506967 repository_dependencies.xml
--- a/repository_dependencies.xml	Mon Mar 04 21:43:23 2013 -0500
+++ b/repository_dependencies.xml	Mon Mar 04 23:59:59 2013 -0500
@@ -1,10 +1,4 @@
 <?xml version="1.0"?>
-<!-- <repositories description="protk-msgfplus requires the protk rubygem to install MSGF+">
-     <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/>
-</repositories>
- -->
-
-
- <repositories description="Requires the protk rubygem to install MSGF+">
-     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+ <repositories description="Requires the protk rubygem to perform the install">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d"/>
 </repositories>
\ No newline at end of file
diff -r 87757d28e0d2 -r a8ae51506967 tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Mar 04 21:43:23 2013 -0500
+++ b/tool_dependencies.xml	Mon Mar 04 23:59:59 2013 -0500
@@ -1,22 +1,22 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="msgfplus" version="20130227">
+    <package name="blast" version="2.2.27">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
-                <action type="shell_command">sh install_msgfplus.sh $INSTALL_DIR 1.1.9</action>
+                <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.2.0</action>
                 <action type="move_file">
-                    <source>install_msgfplus.sh</source>
+                    <source>install_blast.sh</source>
                     <destination>$INSTALL_DIR</destination>
                 </action>
                 <action type="set_environment">
-                    <environment_variable name="PROTK_MSGFPLUS_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PROTK_BLAST_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
             </actions>
         </install>
         <readme>
-            Installs MSGF+ via the protk installer
+            Installs BLAST via the protk installer
         </readme>
     </package>