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1 <?xml version="1.0"?>
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2 <tool_dependency>
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2
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3 <package name="galaxy_protk" version="1.2.2">
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4 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
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5 </package>
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6 <package name="omssa" version="2.1.9">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
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2
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10 <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.2.2</action>
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11 <action type="move_file">
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12 <source>install_omssa.sh</source>
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13 <destination>$INSTALL_DIR</destination>
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14 </action>
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15 <action type="set_environment">
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16 <environment_variable name="PROTK_OMSSA_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
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17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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18 </action>
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19 </actions>
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20 </install>
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21 <readme>
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22 Installs OMSSA via the protk installer
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23 By default OMSSA will run with as many threads as are available.
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24 You can limit the number of threads by setting the environment
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25 variable PROTK_OMSSA_NTHREADS to the number of threads you would like OMSSA to use.
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26 Please see http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies
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27 for details on setting environment variables for galaxy tools
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28 </readme>
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29 </package>
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30
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2
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31 </tool_dependency>
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