Mercurial > repos > iracooke > protk_omssa

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Update
author Ira Cooke <iracooke@gmail.com>
date Sun, 09 Jun 2013 08:16:52 -0500
parents f77532db59b6
children
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1:f77532db59b6 2:8f3813e7b0a6
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="omssa" version="2.1.8"> 3 <package name="galaxy_protk" version="1.2.2">
4 <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c25df71f7b68" prior_installation_required="True"/>
5 </package>
6 <package name="omssa" version="2.1.9">
4 <install version="1.0"> 7 <install version="1.0">
5 <actions> 8 <actions>
6 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> 9 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
7 <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.2.0</action> 10 <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.2.2</action>
8 <action type="move_file"> 11 <action type="move_file">
9 <source>install_omssa.sh</source> 12 <source>install_omssa.sh</source>
10 <destination>$INSTALL_DIR</destination> 13 <destination>$INSTALL_DIR</destination>
11 </action> 14 </action>
12 <action type="set_environment"> 15 <action type="set_environment">
15 </action> 18 </action>
16 </actions> 19 </actions>
17 </install> 20 </install>
18 <readme> 21 <readme>
19 Installs OMSSA via the protk installer 22 Installs OMSSA via the protk installer
23 By default OMSSA will run with as many threads as are available.
24 You can limit the number of threads by setting the environment
25 variable PROTK_OMSSA_NTHREADS to the number of threads you would like OMSSA to use.
26 Please see http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies
27 for details on setting environment variables for galaxy tools
20 </readme> 28 </readme>
21 </package> 29 </package>
22 30
23 </tool_dependency> 31 </tool_dependency>