--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Mon Mar 04 04:15:33 2013 -0500
@@ -0,0 +1,9 @@
+<?xml version="1.0"?>
+<!-- <repositories description="protk-omssa requires the protk rubygem to install omssa">
+     <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/>
+</repositories>
+ -->
+
+ <repositories description="Requires the protk rubygem to install omssa">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+</repositories>
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Mar 04 04:15:33 2013 -0500
@@ -0,0 +1,23 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="omssa" version="2.1.8">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
+                <action type="shell_command">sh install_omssa.sh $INSTALL_DIR 1.1.9</action>
+                <action type="move_file">
+                    <source>install_omssa.sh</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PROTK_OMSSA_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+            Installs OMSSA via the protk installer
+        </readme>
+    </package>
+
+</tool_dependency>
\ No newline at end of file