Mercurial > repos > iracooke > protk_proteogenomics

annotate test-data/PeptideShaker_tiny.mzid @ 3:86fd1757f102 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 864b3f087fff3a7cb18b2c0dd61442c2495e5b98
author iracooke
date Mon, 21 Dec 2015 23:43:55 -0500
parents 68d8c9e521d7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1 <?xml version="1.0" encoding="utf-8"?>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
2 <MzIdentML xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
3 xmlns="http://psidev.info/psi/pi/mzIdentML/1.1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
4 id="PeptideShaker v0.38.2"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
5 xsi:schemaLocation="http://psidev.info/psi/pi/mzIdentML/1.1 http://www.psidev.info/files/mzIdentML1.1.0.xsd"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
6 version="1.1.0" creationDate="2015-05-07T01:24:08">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
7 <cvList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
8 <cv id="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
9 uri="http://psidev.cvs.sourceforge.net/viewvc/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
10 version="3.73.0" fullName="PSI-MS" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
11 <cv id="UNIMOD" uri="http://www.unimod.org/obo/unimod.obo"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
12 fullName="UNIMOD" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
13 <cv id="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
14 uri="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/unit.obo"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
15 fullName="UNIT-ONTOLOGY" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
16 <cv id="PRIDE"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
17 uri="http://code.google.com/p/ebi-pride/source/browse/trunk/pride-core/schema/pride_cv.obo"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
18 fullName="PRIDE" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
19 </cvList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
20 <AnalysisSoftwareList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
21 <AnalysisSoftware name="PeptideShaker" version="0.38.2"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
22 id="ID_software" uri="http://peptide-shaker.googlecode.com">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
23 <ContactRole contact_ref="PS_DEV">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
24 <Role>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
25 <cvParam cvRef="PSI-MS" accession="MS:1001267"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
26 name="software vendor" value="CompOmics" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
27 </Role>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
28 </ContactRole>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
29 <SoftwareName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
30 <cvParam cvRef="PSI-MS" accession="MS:1002458"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
31 name="PeptideShaker" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
32 </SoftwareName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
33 <Customizations>No customisations</Customizations>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
34 </AnalysisSoftware>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
35 </AnalysisSoftwareList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
36 <Provider id="PROVIDER">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
37 <ContactRole contact_ref="PROVIDER">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
38 <Role>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
39 <cvParam cvRef="PSI-MS" accession="MS:1001271"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
40 name="researcher" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
41 </Role>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
42 </ContactRole>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
43 </Provider>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
44 <AuditCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
45 <Person firstName="Proteomics" lastName="Galaxy" id="PROVIDER">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
46 <cvParam cvRef="PSI-MS" accession="MS:1000587"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
47 name="contact address" value="galaxyp@umn.edu" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
48 <cvParam cvRef="PSI-MS" accession="MS:1000589"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
49 name="contact email" value="galaxyp@umn.edu" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
50 <Affiliation organization_ref="ORG_DOC_OWNER" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
51 </Person>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
52 <Organization name="University of Minnesota"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
53 id="ORG_DOC_OWNER">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
54 <cvParam cvRef="PSI-MS" accession="MS:1000586"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
55 name="contact name" value="University of Minnesota" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
56 <cvParam cvRef="PSI-MS" accession="MS:1000587"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
57 name="contact address"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
58 value="Minneapolis, MN 55455, Vereinigte Staaten" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
59 <cvParam cvRef="PSI-MS" accession="MS:1000589"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
60 name="contact email" value="galaxyp@umn.edu" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
61 </Organization>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
62 <Organization name="PeptideShaker developers" id="PS_DEV">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
63 <cvParam cvRef="PSI-MS" accession="MS:1000586"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
64 name="contact name" value="PeptideShaker developers" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
65 <cvParam cvRef="PSI-MS" accession="MS:1000587"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
66 name="contact address"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
67 value="Proteomics Unit, Building for Basic Biology, University of Bergen, Jonas Liesvei 91, N-5009 Bergen, Norway" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
68 <cvParam cvRef="PSI-MS" accession="MS:1000588"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
69 name="contact url"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
70 value="http://peptide-shaker.googlecode.com" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
71 <cvParam cvRef="PSI-MS" accession="MS:1000589"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
72 name="contact email"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
73 value="peptide-shaker@googlegroups.com" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
74 </Organization>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
75 </AuditCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
76 <SequenceCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
77 <DBSequence id="JEMP01000193.1_rev_g3500.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
78 accession="JEMP01000193.1_rev_g3500.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
79 searchDatabase_ref="SearchDB_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
80 <cvParam cvRef="PSI-MS" accession="MS:1001088"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
81 name="protein description" value="280755|283436" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
82 </DBSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
83 <DBSequence id="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
84 accession="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
85 searchDatabase_ref="SearchDB_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
86 <cvParam cvRef="PSI-MS" accession="MS:1001088"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
87 name="protein description" value="36066|38753" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
88 </DBSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
89 <Peptide id="KSPVYKVHFTR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
90 <PeptideSequence>KSPVYKVHFTR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
91 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
92 <Peptide id="SKIPFIVIFDPIEAAR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
93 <PeptideSequence>SQIPFLVLFDPIEAAR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
94 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
95 <Peptide id="SSGNWINIFNPATPSFR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
96 <PeptideSequence>SSGNWLNLFNPATPSFR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
97 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
98 <Peptide id="GGIDSWNAIGYIPVKDFDYK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
99 <PeptideSequence>GGIDSWNALGYIPVQDFDYK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
100 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
101 <Peptide id="GKSGNPMIMIDITDISDSR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
102 <PeptideSequence>GQSGNPMLMLDLTDLSDSR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
103 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
104 <Peptide id="TIEYSYNDFCISEMAAGIGGR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
105 <PeptideSequence>TLEYSYNDFCISEMAAGLGGR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
106 <Modification monoisotopicMassDelta="57.021464" residues="C"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
107 location="10">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
108 <cvParam cvRef="UNIMOD" accession="UNIMOD:4"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
109 name="Carbamidomethyl" value="57.021464" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
110 </Modification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
111 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
112 <Peptide id="TAIFNFRFPK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
113 <PeptideSequence>TALFNFRFPK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
114 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
115 <Peptide id="NWIGHEFFIK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
116 <PeptideSequence>NWIGHEFFLK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
117 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
118 <Peptide id="TWGFKDPIGCSKIDEK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
119 <PeptideSequence>TWGFQDPLGCSQIDEK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
120 <Modification monoisotopicMassDelta="57.021464" residues="C"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
121 location="10">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
122 <cvParam cvRef="UNIMOD" accession="UNIMOD:4"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
123 name="Carbamidomethyl" value="57.021464" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
124 </Modification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
125 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
126 <Peptide id="DGHVFAGASIPYGIAK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
127 <PeptideSequence>DGHVFAGASLPYGLAK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
128 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
129 <Peptide id="SIIDTYKHEGWIPDCR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
130 <PeptideSequence>SLIDTYKHEGWLPDCR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
131 <Modification monoisotopicMassDelta="57.021464" residues="C"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
132 location="15">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
133 <cvParam cvRef="UNIMOD" accession="UNIMOD:4"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
134 name="Carbamidomethyl" value="57.021464" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
135 </Modification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
136 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
137 <Peptide id="DATVEPFDWCCKGR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
138 <PeptideSequence>DATVEPFDWCCQGR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
139 <Modification monoisotopicMassDelta="57.021464" residues="C"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
140 location="10">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
141 <cvParam cvRef="UNIMOD" accession="UNIMOD:4"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
142 name="Carbamidomethyl" value="57.021464" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
143 </Modification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
144 <Modification monoisotopicMassDelta="57.021464" residues="C"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
145 location="11">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
146 <cvParam cvRef="UNIMOD" accession="UNIMOD:4"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
147 name="Carbamidomethyl" value="57.021464" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
148 </Modification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
149 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
150 <Peptide id="IVNNIAVEMTTAR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
151 <PeptideSequence>LVNNIAVEMTTAR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
152 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
153 <Peptide id="IYDTGIFANSR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
154 <PeptideSequence>IYDTGIFANSR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
155 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
156 <Peptide id="SINGYPIPGGGTVR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
157 <PeptideSequence>SINGYPLPGGGTVR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
158 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
159 <Peptide id="FEPPAKETDPITAR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
160 <PeptideSequence>FEPPAKETDPITAR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
161 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
162 <Peptide id="ENIDWNEGYK">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
163 <PeptideSequence>ENIDWNEGYK</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
164 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
165 <Peptide id="RAHYYVPR">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
166 <PeptideSequence>RAHYYVPR</PeptideSequence>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
167 </Peptide>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
168 <PeptideEvidence isDecoy="false" pre="K" post="G" start="712"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
169 end="722" peptide_ref="KSPVYKVHFTR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
170 dBSequence_ref="JEMP01000193.1_rev_g3500.t1" id="PepEv_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
171 <PeptideEvidence isDecoy="false" pre="R" post="E" start="552"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
172 end="568" peptide_ref="SSGNWINIFNPATPSFR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
173 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_232" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
174 <PeptideEvidence isDecoy="false" pre="R" post="G" start="491"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
175 end="510" peptide_ref="GGIDSWNAIGYIPVKDFDYK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
176 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_266" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
177 <PeptideEvidence isDecoy="false" pre="K" post="Q" start="192"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
178 end="210" peptide_ref="GKSGNPMIMIDITDISDSR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
179 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_532" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
180 <PeptideEvidence isDecoy="false" pre="R" post="Q" start="522"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
181 end="542" peptide_ref="TIEYSYNDFCISEMAAGIGGR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
182 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_663" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
183 <PeptideEvidence isDecoy="false" pre="R" post="G" start="182"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
184 end="191" peptide_ref="TAIFNFRFPK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
185 dBSequence_ref="JEMP01000061.1_rev_g10170.t1" id="PepEv_963" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
186 <PeptideEvidence isDecoy="false" pre="K" post="G" start="783"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
187 end="792" peptide_ref="NWIGHEFFIK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
188 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
189 id="PepEv_1108" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
190 <PeptideEvidence isDecoy="false" pre="R" post="G" start="591"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
191 end="606" peptide_ref="TWGFKDPIGCSKIDEK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
192 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
193 id="PepEv_1474" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
194 <PeptideEvidence isDecoy="false" pre="K" post="A" start="67"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
195 end="82" peptide_ref="DGHVFAGASIPYGIAK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
196 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
197 id="PepEv_1796" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
198 <PeptideEvidence isDecoy="false" pre="R" post="M" start="420"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
199 end="435" peptide_ref="SIIDTYKHEGWIPDCR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
200 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
201 id="PepEv_1829" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
202 <PeptideEvidence isDecoy="false" pre="K" post="G" start="477"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
203 end="490" peptide_ref="DATVEPFDWCCKGR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
204 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
205 id="PepEv_1958" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
206 <PeptideEvidence isDecoy="false" pre="K" post="R" start="168"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
207 end="180" peptide_ref="IVNNIAVEMTTAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
208 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
209 id="PepEv_2003" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
210 <PeptideEvidence isDecoy="false" pre="K" post="A" start="253"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
211 end="263" peptide_ref="IYDTGIFANSR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
212 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
213 id="PepEv_2093" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
214 <PeptideEvidence isDecoy="false" pre="R" post="F" start="276"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
215 end="289" peptide_ref="SINGYPIPGGGTVR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
216 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
217 id="PepEv_2130" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
218 <PeptideEvidence isDecoy="false" pre="R" post="V" start="290"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
219 end="303" peptide_ref="FEPPAKETDPITAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
220 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
221 id="PepEv_2202" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
222 <PeptideEvidence isDecoy="false" pre="K" post="A" start="463"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
223 end="472" peptide_ref="ENIDWNEGYK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
224 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
225 id="PepEv_2204" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
226 <PeptideEvidence isDecoy="false" pre="K" post="E" start="688"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
227 end="695" peptide_ref="RAHYYVPR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
228 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
229 id="PepEv_2444" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
230 <PeptideEvidence isDecoy="false" pre="R" post="M" start="401"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
231 end="416" peptide_ref="SKIPFIVIFDPIEAAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
232 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
233 id="PepEv_3117" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
234 </SequenceCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
235 <AnalysisCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
236 <SpectrumIdentification spectrumIdentificationList_ref="SIL_1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
237 spectrumIdentificationProtocol_ref="SearchProtocol_1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
238 id="SpecIdent_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
239 <InputSpectra spectraData_ref="ma201_Vp_1-10.mzML.mgf" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
240 <InputSpectra spectraData_ref="ma201_Vp_11-20.mzML.mgf" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
241 <SearchDatabaseRef searchDatabase_ref="SearchDB_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
242 </SpectrumIdentification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
243 <ProteinDetection proteinDetectionProtocol_ref="PeptideShaker_1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
244 proteinDetectionList_ref="Protein_groups" id="PD_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
245 <InputSpectrumIdentifications spectrumIdentificationList_ref="SIL_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
246 </ProteinDetection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
247 </AnalysisCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
248 <AnalysisProtocolCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
249 <SpectrumIdentificationProtocol analysisSoftware_ref="ID_software"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
250 id="SearchProtocol_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
251 <SearchType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
252 <cvParam cvRef="PSI-MS" accession="MS:1001083"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
253 name="ms-ms search" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
254 </SearchType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
255 <AdditionalSearchParams>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
256 <cvParam cvRef="PSI-MS" accession="MS:1001211"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
257 name="parent mass type mono" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
258 <cvParam cvRef="PSI-MS" accession="MS:1001256"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
259 name="fragment mass type mono" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
260 </AdditionalSearchParams>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
261 <ModificationParams>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
262 <SearchModification residues="C" massDelta="57.021464"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
263 fixedMod="true">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
264 <cvParam cvRef="PSI-MS" accession="MS:1001460"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
265 name="unknown modification" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
266 <cvParam cvRef="PSI-MS" accession="MS:1002504"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
267 name="modification index" value="0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
268 </SearchModification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
269 <SearchModification residues="M" massDelta="15.994915"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
270 fixedMod="false">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
271 <cvParam cvRef="PSI-MS" accession="MS:1001460"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
272 name="unknown modification" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
273 <cvParam cvRef="PSI-MS" accession="MS:1002504"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
274 name="modification index" value="1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
275 </SearchModification>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
276 </ModificationParams>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
277 <Enzymes independent="false">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
278 <Enzyme missedCleavages="2" semiSpecific="false" id="Enz1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
279 name="Trypsin">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
280 <EnzymeName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
281 <cvParam cvRef="PSI-MS" accession="MS:1001251"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
282 name="Trypsin" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
283 </EnzymeName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
284 </Enzyme>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
285 </Enzymes>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
286 <FragmentTolerance>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
287 <cvParam accession="MS:1001412" cvRef="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
288 unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
289 value="0.2" name="search tolerance plus value" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
290 <cvParam accession="MS:1001413" cvRef="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
291 unitCvRef="UO" unitName="dalton" unitAccession="UO:0000221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
292 value="0.2" name="search tolerance minus value" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
293 </FragmentTolerance>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
294 <ParentTolerance>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
295 <cvParam accession="MS:1001412" cvRef="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
296 unitCvRef="UO" unitName="parts per million"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
297 unitAccession="UO:0000169" value="50.0"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
298 name="search tolerance plus value" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
299 <cvParam accession="MS:1001413" cvRef="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
300 unitCvRef="UO" unitName="parts per million"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
301 unitAccession="UO:0000169" value="50.0"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
302 name="search tolerance minus value" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
303 </ParentTolerance>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
304 <Threshold>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
305 <cvParam cvRef="PSI-MS" accession="MS:1001364"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
306 name="distinct peptide-level global FDR" value="1.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
307 <cvParam cvRef="PSI-MS" accession="MS:1002350"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
308 name="PSM-level global FDR" value="1.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
309 <cvParam cvRef="PSI-MS" accession="MS:1002557"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
310 name="D-score threshold" value="95.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
311 </Threshold>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
312 </SpectrumIdentificationProtocol>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
313 <ProteinDetectionProtocol analysisSoftware_ref="ID_software"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
314 id="PeptideShaker_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
315 <Threshold>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
316 <cvParam cvRef="PSI-MS" accession="MS:1002369"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
317 name="protein group-level global FDR" value="0.01" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
318 </Threshold>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
319 </ProteinDetectionProtocol>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
320 </AnalysisProtocolCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
321 <DataCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
322 <Inputs>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
323 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_1-10.mzML.comet.pep.xml"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
324 id="SourceFile_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
325 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
326 <cvParam cvRef="PSI-MS" accession="MS:1001421"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
327 name="pepXML format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
328 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
329 </SourceFile>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
330 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_1-10.mzML.msgf.mzid"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
331 id="SourceFile_2">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
332 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
333 <cvParam cvRef="PSI-MS" accession="MS:1002073"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
334 name="mzIdentML format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
335 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
336 </SourceFile>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
337 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_11-20.mzML.comet.pep.xml"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
338 id="SourceFile_3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
339 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
340 <cvParam cvRef="PSI-MS" accession="MS:1001421"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
341 name="pepXML format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
342 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
343 </SourceFile>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
344 <SourceFile location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/searchgui_input_PeptideShaker_temp/ma201_Vp_11-20.mzML.msgf.mzid"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
345 id="SourceFile_4">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
346 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
347 <cvParam cvRef="PSI-MS" accession="MS:1002073"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
348 name="mzIdentML format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
349 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
350 </SourceFile>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
351 <SearchDatabase numDatabaseSequences="23866"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
352 location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/input_database.fasta"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
353 id="SearchDB_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
354 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
355 <cvParam cvRef="PSI-MS" accession="MS:1001348"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
356 name="FASTA format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
357 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
358 <DatabaseName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
359 <userParam name="input_database.fasta" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
360 </DatabaseName>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
361 <cvParam cvRef="PSI-MS" accession="MS:1001073"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
362 name="database type amino acid" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
363 </SearchDatabase>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
364 <SpectraData location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
365 id="ma201_Vp_1-10.mzML.mgf" name="ma201_Vp_1-10.mzML.mgf">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
366 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
367 <cvParam cvRef="PSI-MS" accession="MS:1001062"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
368 name="Mascot MGF file" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
369 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
370 <SpectrumIDFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
371 <cvParam cvRef="PSI-MS" accession="MS:1000774"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
372 name="multiple peak list nativeID format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
373 </SpectrumIDFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
374 </SpectraData>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
375 <SpectraData location="/data/galaxy/galaxy/database/job_working_directory/018/18515/PeptideShakerCLI/.PeptideShaker_unzip_temp/peptideshaker_output_PeptideShaker_temp/data/ma201_Vp_11-20.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
376 id="ma201_Vp_11-20.mzML.mgf" name="ma201_Vp_11-20.mzML.mgf">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
377 <FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
378 <cvParam cvRef="PSI-MS" accession="MS:1001062"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
379 name="Mascot MGF file" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
380 </FileFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
381 <SpectrumIDFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
382 <cvParam cvRef="PSI-MS" accession="MS:1000774"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
383 name="multiple peak list nativeID format" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
384 </SpectrumIDFormat>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
385 </SpectraData>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
386 </Inputs>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
387 <AnalysisData>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
388 <SpectrumIdentificationList id="SIL_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
389 <FragmentationTable>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
390 <Measure id="Measure_MZ">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
391 <cvParam unitCvRef="PSI-MS" accession="MS:1001225"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
392 cvRef="PSI-MS" unitName="m/z"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
393 unitAccession="MS:1000040" name="product ion m/z" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
394 </Measure>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
395 <Measure id="Measure_Int">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
396 <cvParam accession="MS:1001226" cvRef="PSI-MS"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
397 name="product ion intensity" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
398 </Measure>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
399 <Measure id="Measure_Error">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
400 <cvParam unitCvRef="PSI-MS" accession="MS:1001227"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
401 cvRef="PSI-MS" unitName="m/z"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
402 unitAccession="MS:1000040"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
403 name="product ion m/z error" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
404 </Measure>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
405 </FragmentationTable>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
406 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
407 spectrumID="index=3152" id="SIR_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
408 <SpectrumIdentificationItem passThreshold="false"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
409 rank="1" peptide_ref="KSPVYKVHFTR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
410 calculatedMassToCharge="1360.7615466836999"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
411 experimentalMassToCharge="1362.805053710938"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
412 chargeState="1" id="SII_1_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
413 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
414 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
415 <IonType charge="1" index="1 4">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
416 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
417 values="175.2081208 560.3388993" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
418 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
419 values="94.0459823608 116.2766723633" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
420 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
421 values="0.08916864948798775 0.0449421494880653" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
422 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
423 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
424 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
425 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
426 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
427 name="PeptideShaker PSM score" value="0.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
428 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
429 name="PeptideShaker PSM confidence" value="0.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
430 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
431 name="MS-GF:SpecEValue" value="1.4757611E-6" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
432 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
433 name="theoretical mass" value="1360.7615466836999" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
434 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
435 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
436 value="Not Validated" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
437 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
438 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
439 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
440 value="Suresh Vp 1 to 10_BAF.3535.3535.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
441 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
442 name="retention time" value="6855.00001" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
443 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
444 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
445 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
446 spectrumID="index=3148" id="SIR_5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
447 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
448 peptide_ref="SKIPFIVIFDPIEAAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
449 calculatedMassToCharge="1814.9930716837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
450 experimentalMassToCharge="1816.015747070313"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
451 chargeState="1" id="SII_5_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
452 <PeptideEvidenceRef peptideEvidence_ref="PepEv_3117" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
453 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
454 <IonType charge="1" index="2 3 4 5 6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
455 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
456 values="216.0671564 329.0897438 426.082943 573.1137528 686.1894091" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
457 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
458 values="2255.6081542969 1348.0354003906 410.8401184082 590.9721679688 626.9710083008" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
459 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
460 values="-0.030726066812007957 -0.09220266681199973 -0.15176746681203213 -0.1893716668118941 -0.19777936681191477" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
461 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
462 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
463 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
464 <IonType charge="1" index="1 3 4 6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
465 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
466 values="175.1170634 317.1104751 446.12835 656.1880758" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
467 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
468 values="2382.1306152344 2112.2111816406 565.1505126953 19230.751953125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
469 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
470 values="-0.0018887505119948855 -0.082705050512061 -0.10742315051203377 -0.18452535051198993" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
471 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
472 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
473 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
474 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
475 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
476 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
477 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
478 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
479 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
480 name="MS-GF:SpecEValue" value="5.6121233E-17" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
481 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
482 name="Comet:expectation value" value="0.00177" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
483 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
484 name="theoretical mass" value="1814.9930716837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
485 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
486 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
487 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
488 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
489 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
490 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
491 value="Suresh Vp 1 to 10_BAF.3499.3499.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
492 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
493 name="retention time" value="6375.00001" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
494 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
495 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
496 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
497 spectrumID="index=2911" id="SIR_232">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
498 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
499 peptide_ref="SSGNWINIFNPATPSFR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
500 calculatedMassToCharge="1906.9325946837002"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
501 experimentalMassToCharge="1907.959594726563"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
502 chargeState="1" id="SII_232_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
503 <PeptideEvidenceRef peptideEvidence_ref="PepEv_232" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
504 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
505 <IonType charge="1" index="5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
506 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
507 values="159.1926704" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
508 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
509 values="1694.6577148438" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
510 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
511 values="0.10099555274800309" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
512 <cvParam cvRef="PRIDE" accession="PRIDE:0000258"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
513 name="immonium W" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
514 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
515 <IonType charge="1" index="2 4 5 6 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
516 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
517 values="175.2236148 346.1853593 532.2513177 645.3380262 872.4408065" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
518 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
519 values="8024.4521484375 4179.6333007813 4480.1513671875 2533.8122558594 5507.6391601563" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
520 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
521 values="0.1522823331880261 0.04963583318800602 0.03628123318799226 0.038925733187966216 0.014715033188053894" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
522 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
523 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
524 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
525 <IonType charge="1" index="1 2 4 5 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
526 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
527 values="175.2236148 322.2258838 506.3000972 607.3333353 775.4335766 889.4571728" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
528 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
529 values="8024.4521484375 2361.3647460938 9420.435546875 2011.4813232422 7171.8198242188 1813.6722412109" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
530 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
531 values="0.10466264948800585 0.03851764948802838 0.027939049487997636 0.013498149488100353 0.023861449488094877 0.00453064948806059" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
532 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
533 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
534 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
535 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
536 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
537 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
538 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
539 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
540 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
541 name="MS-GF:SpecEValue" value="2.226483E-21" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
542 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
543 name="Comet:expectation value" value="1.63E-6" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
544 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
545 name="theoretical mass" value="1906.9325946837002" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
546 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
547 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
548 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
549 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
550 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
551 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
552 value="Suresh Vp 1 to 10_BAF.3130.3130.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
553 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
554 name="retention time" value="4395.000039" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
555 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
556 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
557 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
558 spectrumID="index=2875" id="SIR_266">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
559 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
560 peptide_ref="GGIDSWNAIGYIPVKDFDYK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
561 calculatedMassToCharge="2257.0691326837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
562 experimentalMassToCharge="2258.06640625" chargeState="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
563 id="SII_266_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
564 <PeptideEvidenceRef peptideEvidence_ref="PepEv_266" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
565 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
566 <IonType charge="1" index="8 9 11">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
567 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
568 values="801.2298039 914.333872 1134.323656" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
569 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
570 values="856.7103271484 526.3665771484 455.4053955078" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
571 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
572 values="-0.1227895668120027 -0.10278546681195166 -0.19778546681209264" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
573 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
574 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
575 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
576 <IonType charge="1" index="4 5 6 7 8 9">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
577 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
578 values="572.2230968 687.2196287 815.3014307 914.333872 1011.337411 1124.412281" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
579 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
580 values="869.029296875 914.8277587891 1155.3531494141 526.3665771484 11564.103515625 1552.0529785156" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
581 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
582 values="-0.0483843505120376 -0.07879545051196146 -0.055571450512047704 -0.0915441505119361 -0.14076915051202832 -0.1499631505121215" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
583 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
584 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
585 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
586 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
587 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
588 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
589 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
590 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
591 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
592 name="MS-GF:SpecEValue" value="6.1680666E-19" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
593 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
594 name="Comet:expectation value" value="5.56E-4" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
595 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
596 name="theoretical mass" value="2257.0691326837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
597 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
598 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
599 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
600 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
601 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
602 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
603 value="Suresh Vp 1 to 10_BAF.3090.3090.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
604 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
605 name="retention time" value="4335.000089" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
606 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
607 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
608 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
609 spectrumID="index=2595" id="SIR_531">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
610 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
611 peptide_ref="GKSGNPMIMIDITDISDSR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
612 calculatedMassToCharge="2048.9506906837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
613 experimentalMassToCharge="2049.973388671875"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
614 chargeState="1" id="SII_531_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
615 <PeptideEvidenceRef peptideEvidence_ref="PepEv_532" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
616 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
617 <IonType charge="1" index="4 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
618 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
619 values="330.1934519 672.2565764 785.3561225" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
620 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
621 values="812.1585083008 584.9240112305 608.6773681641" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
622 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
623 values="0.05264143318800052 -0.020410066812019068 -0.004927966812033446" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
624 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
625 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
626 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
627 <IonType charge="1" index="1 2 3 4 5 6 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
628 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
629 values="175.2043334 262.1996821 377.1780362 464.1727512 577.2515789 692.2688392 793.2825088 906.3857175" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
630 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
631 values="2373.419921875 12670.84765625 701.4549560547 918.1682739258 7283.443359375 952.5310058594 489.9209289551 5137.2397460938" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
632 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
633 values="0.08538124948799464 0.04870194948802009 1.1304948799306658E-4 -0.03719995051204705 -0.042436250511968865 -0.0521189505119537 -0.08612835051201273 -0.06698365051192923" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
634 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
635 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
636 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
637 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
638 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
639 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
640 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
641 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
642 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
643 name="MS-GF:SpecEValue" value="1.1375826E-22" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
644 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
645 name="Comet:expectation value" value="3.97E-6" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
646 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
647 name="theoretical mass" value="2048.9506906837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
648 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
649 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
650 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
651 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
652 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
653 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
654 value="Suresh Vp 1 to 10_BAF.2784.2784.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
655 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
656 name="retention time" value="3945.00013" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
657 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
658 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
659 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
660 spectrumID="index=2460" id="SIR_662">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
661 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
662 peptide_ref="TIEYSYNDFCISEMAAGIGGR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
663 calculatedMassToCharge="2353.0354666836993"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
664 experimentalMassToCharge="2354.055908203125"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
665 chargeState="1" id="SII_662_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
666 <PeptideEvidenceRef peptideEvidence_ref="PepEv_663" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
667 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
668 <IonType charge="1" index="4 6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
669 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
670 values="136.2483373" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
671 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
672 values="841.1395263672" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
673 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
674 values="0.17265545274801752" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
675 <cvParam cvRef="PRIDE" accession="PRIDE:0000259"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
676 name="immonium Y" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
677 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
678 <IonType charge="1" index="2 3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
679 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
680 values="215.3163221 344.3207733" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
681 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
682 values="1592.1259765625 2128.7971191406" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
683 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
684 values="0.1773026331880203 0.1391608331879297" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
685 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
686 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
687 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
688 <IonType charge="1" index="1 3 4 5 6 7 8 9 10 13">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
689 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
690 values="175.3073715 289.3380414 402.3820588 459.3946788 530.4587634 601.5289066 732.5413482 861.5896146 948.6174862 1368.658885" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
691 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
692 values="3602.544921875 965.5579833984 952.5689086914 1547.6528320313 1314.4979248047 1342.8278808594 2017.9787597656 805.143737793 832.4652099609 2652.8041992188" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
693 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
694 values="0.18841934948798666 0.1761612494879614 0.13611464948792218 0.1272706494879685 0.15424124948799545 0.18727044948809635 0.15922704948809496 0.1649004494880728 0.16074404948813026 0.019015849488141612" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
695 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
696 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
697 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
698 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
699 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
700 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
701 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
702 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
703 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
704 name="MS-GF:SpecEValue" value="9.295855E-22" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
705 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
706 name="Comet:expectation value" value="1.9E-5" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
707 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
708 name="theoretical mass" value="2353.0354666836993" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
709 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
710 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
711 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
712 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
713 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
714 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
715 value="Suresh Vp 1 to 10_BAF.2639.2639.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
716 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
717 name="retention time" value="3795.00009" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
718 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
719 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
720 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
721 spectrumID="index=2154" id="SIR_960">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
722 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
723 peptide_ref="TAIFNFRFPK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
724 calculatedMassToCharge="1239.6764286837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
725 experimentalMassToCharge="1240.672973632813"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
726 chargeState="1" id="SII_960_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
727 <PeptideEvidenceRef peptideEvidence_ref="PepEv_963" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
728 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
729 <IonType charge="1" index="3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
730 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
731 values="86.15600682" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
732 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
733 values="1980.71875" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
734 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
735 values="0.059580972747994565" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
736 <cvParam cvRef="PRIDE" accession="PRIDE:0000249"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
737 name="immonium L" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
738 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
739 <IonType charge="1" index="2 3 4 5 6 7">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
740 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
741 values="173.1756985 286.2326248 433.2756344 547.2831947 694.3744765 850.4309643" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
742 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
743 values="1953.3233642578 4693.9848632813 1150.2358398438 1567.4453125 988.5994873047 1339.2094726563" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
744 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
745 values="0.08362903318803205 0.05649133318797794 0.03108693318802125 -0.004279766811919217 0.018588033188166264 -0.026035166811880117" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
746 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
747 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
748 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
749 <IonType charge="1" index="4 6 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
750 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
751 values="120.157245" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
752 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
753 values="1202.0906982422" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
754 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
755 values="0.07646915274801813" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
756 <cvParam cvRef="PRIDE" accession="PRIDE:0000244"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
757 name="immonium F" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
758 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
759 <IonType charge="1" index="2 3 4 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
760 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
761 values="244.2239359 391.2658488 547.2831947 694.3744765" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
762 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
763 values="3205.6369628906 1862.5223388672 1567.4453125 988.5994873047" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
764 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
765 values="0.058367749487985066 0.03186664948799489 -0.05189845051199882 -0.029030650511913336" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
766 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
767 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
768 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
769 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
770 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
771 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
772 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
773 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
774 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
775 name="MS-GF:SpecEValue" value="4.687549E-11" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
776 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
777 name="Comet:expectation value" value="1.17E-4" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
778 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
779 name="theoretical mass" value="1239.6764286837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
780 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
781 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
782 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
783 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
784 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
785 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
786 value="Suresh Vp 1 to 10_BAF.2314.2314.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
787 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
788 name="retention time" value="3510.00003" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
789 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
790 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
791 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
792 spectrumID="index=2010" id="SIR_1102">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
793 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
794 peptide_ref="NWIGHEFFIK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
795 calculatedMassToCharge="1289.6556926837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
796 experimentalMassToCharge="1290.659057617188"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
797 chargeState="1" id="SII_1102_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
798 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1108" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
799 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
800 <IonType charge="1" index="5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
801 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
802 values="110.1483753" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
803 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
804 values="2292.7473144531" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
805 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
806 values="0.0771014527480105" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
807 <cvParam cvRef="PRIDE" accession="PRIDE:0000246"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
808 name="immonium H" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
809 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
810 <IonType charge="1" index="3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
811 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
812 values="86.18748451" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
813 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
814 values="3341.912109375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
815 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
816 values="0.09105866274799723" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
817 <cvParam cvRef="PRIDE" accession="PRIDE:0000247"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
818 name="immonium I" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
819 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
820 <IonType charge="1" index="9">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
821 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
822 values="86.18748451" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
823 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
824 values="3341.912109375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
825 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
826 values="0.09105866274799723" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
827 <cvParam cvRef="PRIDE" accession="PRIDE:0000249"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
828 name="immonium L" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
829 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
830 <IonType charge="1" index="2 3 4 5 6 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
831 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
832 values="301.2031809 414.2495241 471.2575557 608.3064201 737.3316022 884.3888407 1031.444747" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
833 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
834 values="3528.5610351563 2292.0844726563 3336.9912109375 3646.4587402344 6842.9594726563 3723.3637695313 2257.533203125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
835 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
836 values="0.07366443318795746 0.03594363318791238 0.022511233187969992 0.012463633187962841 -0.004947266811996087 -0.01612276681203184 -0.028630466812046507" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
837 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
838 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
839 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
840 <IonType charge="1" index="7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
841 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
842 values="120.1761017" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
843 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
844 values="2757.1682128906" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
845 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
846 values="0.09532585274801875" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
847 <cvParam cvRef="PRIDE" accession="PRIDE:0000244"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
848 name="immonium F" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
849 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
850 <IonType charge="1" index="4 5 6 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
851 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
852 values="554.3698967 683.386572 820.4158127 877.4458342 990.5329889" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
853 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
854 values="2390.6420898438 3308.1948242188 2950.76171875 5193.09375 2030.4639892578" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
855 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
856 values="0.03620054948805773 0.010282849488021384 -0.01938845051199678 -0.010830950511945048 -0.007740250512028979" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
857 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
858 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
859 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
860 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
861 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
862 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
863 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
864 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
865 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
866 name="MS-GF:SpecEValue" value="5.9105287E-13" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
867 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
868 name="Comet:expectation value" value="5.93E-7" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
869 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
870 name="theoretical mass" value="1289.6556926837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
871 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
872 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
873 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
874 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
875 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
876 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
877 value="Suresh Vp 1 to 10_BAF.2160.2160.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
878 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
879 name="retention time" value="3360.00006" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
880 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
881 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
882 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
883 spectrumID="index=1638" id="SIR_1467">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
884 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
885 peptide_ref="TWGFKDPIGCSKIDEK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
886 calculatedMassToCharge="1879.8410656837002"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
887 experimentalMassToCharge="1880.853271484375"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
888 chargeState="1" id="SII_1467_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
889 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1474" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
890 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
891 <IonType charge="1" index="6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
892 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
893 values="735.4115666" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
894 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
895 values="571.9797363281" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
896 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
897 values="0.1018991331881125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
898 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
899 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
900 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
901 <IonType charge="1" index="3 4 5 6 7 8 10 11 14">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
902 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
903 values="391.2811912 504.3399882 632.4635661 719.4426364 879.4386819 936.4702445 1146.579995 1261.674915 1593.720618" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
904 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
905 values="401.0267028809 437.2299194336 416.588684082 951.6014404297 524.7750854492 1855.3865966797 4066.330078125 550.8740844727 457.3592224121" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
906 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
907 values="0.09885104948796197 0.07358404948791986 0.13858394948795194 0.08562624948797293 0.05102274948797003 0.06112134948796211 0.03404384948794359 0.1020208494878716 -7.321505120216898E-4" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
908 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
909 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
910 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
911 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
912 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
913 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
914 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
915 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
916 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
917 name="MS-GF:SpecEValue" value="6.311287E-20" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
918 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
919 name="Comet:expectation value" value="1.93E-5" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
920 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
921 name="theoretical mass" value="1879.8410656837002" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
922 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
923 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
924 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
925 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
926 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
927 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
928 value="Suresh Vp 1 to 10_BAF.1764.1764.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
929 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
930 name="retention time" value="3000.00008" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
931 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
932 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
933 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
934 spectrumID="index=1314" id="SIR_1788">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
935 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
936 peptide_ref="DGHVFAGASIPYGIAK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
937 calculatedMassToCharge="1601.8201846836998"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
938 experimentalMassToCharge="1602.826171875" chargeState="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
939 id="SII_1788_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
940 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1796" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
941 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
942 <IonType charge="1" index="10 14">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
943 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
944 values="86.16025685" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
945 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
946 values="5797.5991210938" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
947 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
948 values="0.06383100274798892" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
949 <cvParam cvRef="PRIDE" accession="PRIDE:0000249"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
950 name="immonium L" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
951 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
952 <IonType charge="1" index="3 4 5 6 7 8 9">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
953 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
954 values="310.1317659 409.1861827 556.2425658 627.2770716 684.2657353 755.2986331 842.3129855" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
955 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
956 values="12802.5849609375 17813.5859375 10815.6474609375 13652.6748046875 5740.2338867188 9100.9169921875 10459.75390625" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
957 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
958 values="0.0171704331880278 0.0031732331880220954 -0.008857666811991294 -0.011465866811931846 -0.04426616681200812 -0.04848236681198159 -0.06615796681194297" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
959 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
960 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
961 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
962 <IonType charge="1" index="6 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
963 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
964 values="648.3472451 761.3946474 848.3794344" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
965 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
966 values="29178.005859375 6038.7436523438 5481.1694335938" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
967 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
968 values="-0.02428505051193497 -0.06094675051190279 -0.10818775051188823" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
969 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
970 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
971 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
972 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
973 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
974 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
975 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
976 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
977 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
978 name="MS-GF:SpecEValue" value="1.45885E-14" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
979 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
980 name="Comet:expectation value" value="1.19E-8" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
981 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
982 name="theoretical mass" value="1601.8201846836998" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
983 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
984 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
985 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
986 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
987 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
988 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
989 value="Suresh Vp 1 to 10_BAF.1417.1417.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
990 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
991 name="retention time" value="2655.00005" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
992 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
993 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
994 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
995 spectrumID="index=1278" id="SIR_1821">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
996 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
997 peptide_ref="SIIDTYKHEGWIPDCR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
998 calculatedMassToCharge="1988.9414386837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
999 experimentalMassToCharge="1989.942993164063"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1000 chargeState="1" id="SII_1821_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1001 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1829" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1002 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1003 <IonType charge="1" index="3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1004 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1005 values="86.17885706" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1006 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1007 values="610.5478515625" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1008 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1009 values="0.08243121274799137" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1010 <cvParam cvRef="PRIDE" accession="PRIDE:0000247"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1011 name="immonium I" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1012 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1013 <IonType charge="1" index="2 12">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1014 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1015 values="86.17885706" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1016 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1017 values="610.5478515625" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1018 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1019 values="0.08243121274799137" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1020 <cvParam cvRef="PRIDE" accession="PRIDE:0000249"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1021 name="immonium L" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1022 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1023 <IonType charge="1" index="2 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1024 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1025 values="201.264965 530.3453957" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1026 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1027 values="625.8438720703 1064.8774414063" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1028 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1029 values="0.14159653318802157 0.0633412331881118" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1030 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1031 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1032 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1033 <IonType charge="1" index="1 2 4 7 12">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1034 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1035 values="175.2807566 335.2674971 547.3336648 903.534319 1561.736856" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1036 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1037 values="2446.9299316406 3472.2236328125 1438.3464355469 1453.9185791016 1173.3823242188" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1038 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1039 values="0.16180444948798822 0.11789594948800186 0.1043566494879542 0.12016984948786558 0.015239849487898027" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1040 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1041 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1042 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1043 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1044 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1045 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1046 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1047 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1048 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1049 name="MS-GF:SpecEValue" value="1.2110047E-14" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1050 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1051 name="Comet:expectation value" value="1.0E-5" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1052 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1053 name="theoretical mass" value="1988.9414386837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1054 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1055 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1056 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1057 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1058 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1059 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1060 value="Suresh Vp 1 to 10_BAF.1379.1379.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1061 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1062 name="retention time" value="2625.00017" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1063 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1064 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1065 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1066 spectrumID="index=1142" id="SIR_1949">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1067 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1068 peptide_ref="DATVEPFDWCCKGR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1069 calculatedMassToCharge="1739.7031926836996"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1070 experimentalMassToCharge="1740.722900390625"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1071 chargeState="1" id="SII_1949_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1072 <PeptideEvidenceRef peptideEvidence_ref="PepEv_1958" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1073 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1074 <IonType charge="1" index="3 4 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1075 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1076 values="288.199236 387.2451564 516.2884555" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1077 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1078 values="6720.017578125 3386.6696777344 2882.9345703125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1079 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1080 values="0.0802235331879615 0.05772993318794306 0.0584360331880589" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1081 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1082 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1083 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1084 <IonType charge="1" index="1 2 3 4 5 6 9 13">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1085 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1086 values="175.2260669 232.2273062 360.2307916 520.2848429 680.307304 866.3628321 1225.497004 1625.806125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1087 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1088 values="11933.0283203125 3168.8996582031 14676.55078125 4906.0317382813 2781.6721191406 25219.73046875 6433.9301757813 4687.5185546875" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1089 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1090 values="0.10711474948800515 0.08689004948797674 0.031797449487896756 0.05519974948788331 0.047011849487944346 0.023226949487821003 0.009277849487943968 0.12259884948798572" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1091 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1092 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1093 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1094 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1095 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1096 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1097 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1098 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1099 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1100 name="MS-GF:SpecEValue" value="4.30327E-17" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1101 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1102 name="Comet:expectation value" value="0.00253" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1103 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1104 name="theoretical mass" value="1739.7031926836996" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1105 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1106 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1107 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1108 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1109 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1110 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1111 value="Suresh Vp 1 to 10_BAF.1237.1237.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1112 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1113 name="retention time" value="2535.00019" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1114 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1115 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1116 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1117 spectrumID="index=1090" id="SIR_1993">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1118 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1119 peptide_ref="IVNNIAVEMTTAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1120 calculatedMassToCharge="1430.7551496836998"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1121 experimentalMassToCharge="1431.759643554688"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1122 chargeState="1" id="SII_1993_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1123 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2003" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1124 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1125 <IonType charge="1" index="3 4 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1126 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1127 values="327.3735818 441.4439649 554.5004461" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1128 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1129 values="510.2658691406 936.6388549805 468.2252807617" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1130 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1131 values="0.17090033318800124 0.19835643318799612 0.17077363318799144" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1132 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1133 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1134 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1135 <IonType charge="1" index="1 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1136 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1137 values="175.277743 579.4507611" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1138 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1139 values="2674.9750976563 590.8766479492" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1140 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1141 values="0.1587908494879855 0.15885194948805292" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1142 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1143 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1144 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1145 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1146 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1147 name="PeptideShaker PSM score" value="33.93" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1148 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1149 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1150 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1151 name="MS-GF:SpecEValue" value="6.0960174E-11" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1152 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1153 name="Comet:expectation value" value="0.0687" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1154 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1155 name="theoretical mass" value="1430.7551496836998" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1156 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1157 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1158 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1159 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1160 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1161 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1162 value="Suresh Vp 1 to 10_BAF.1183.1183.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1163 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1164 name="retention time" value="2505.00015" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1165 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1166 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1167 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1168 spectrumID="index=997" id="SIR_2082">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1169 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1170 peptide_ref="IYDTGIFANSR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1171 calculatedMassToCharge="1255.6196926837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1172 experimentalMassToCharge="1256.614379882813"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1173 chargeState="1" id="SII_2082_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1174 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2093" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1175 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1176 <IonType charge="1" index="1 6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1177 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1178 values="86.20147456" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1179 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1180 values="10754.736328125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1181 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1182 values="0.10504871274798688" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1183 <cvParam cvRef="PRIDE" accession="PRIDE:0000247"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1184 name="immonium I" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1185 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1186 <IonType charge="1" index="2 3 5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1187 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1188 values="277.2844704 392.3127177 550.3603379" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1189 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1190 values="8924.7080078125 14721.9853515625 28991.875" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1191 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1192 values="0.12980993318797118 0.13111423318798643 0.10959143318802944" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1193 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1194 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1195 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1196 <IonType charge="1" index="1 2 3 4 5 7 8">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1197 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1198 values="175.2555437 262.2796952 376.3211017 447.3502895 594.4002348 764.4644456 865.5152152" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1199 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1200 values="41491.48828125 18407.037109375 8552.75390625 12993.298828125 9164.4599609375 9096.0927734375 54587.18359375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1201 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1202 values="0.13659154948800278 0.12871504948799384 0.12719454948796738 0.11926834948792475 0.10079964948806719 0.0594824494879731 0.06257304948792353" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1203 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1204 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1205 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1206 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1207 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1208 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1209 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1210 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1211 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1212 name="MS-GF:SpecEValue" value="1.9954336E-14" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1213 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1214 name="Comet:expectation value" value="4.65E-4" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1215 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1216 name="theoretical mass" value="1255.6196926837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1217 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1218 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1219 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1220 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1221 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1222 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1223 value="Suresh Vp 1 to 10_BAF.1086.1086.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1224 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1225 name="retention time" value="2445.00007" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1226 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1227 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1228 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1229 spectrumID="index=973" id="SIR_2101">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1230 <SpectrumIdentificationItem passThreshold="false"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1231 rank="1" peptide_ref="SINGYPIPGGGTVR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1232 calculatedMassToCharge="1386.7255556837001"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1233 experimentalMassToCharge="1388.717041015625"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1234 chargeState="1" id="SII_2101_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1235 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2130" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1236 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1237 <IonType charge="1" index="4">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1238 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1239 values="372.3600029" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1240 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1241 values="653.9891967773" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1242 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1243 values="0.17224343318798674" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1244 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1245 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1246 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1247 <IonType charge="1" index="1 2 7 9 11">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1248 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1249 values="175.2777284 274.3329063 643.4726564 853.5277253 1073.628499" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1250 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1251 values="5538.7685546875 706.6557617188 1091.4812011719 592.8056030273 3712.9094238281" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1252 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1253 values="0.15877624948799962 0.14554014948794247 0.12045524948803177 0.03869614948803246 0.05468584948789612" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1254 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1255 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1256 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1257 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1258 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1259 name="PeptideShaker PSM score" value="2.41" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1260 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1261 name="PeptideShaker PSM confidence" value="46.75" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1262 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1263 name="MS-GF:SpecEValue" value="1.0158209E-8" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1264 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1265 name="Comet:expectation value" value="8.61" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1266 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1267 name="theoretical mass" value="1386.7255556837001" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1268 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1269 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1270 value="Not Validated" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1271 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1272 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1273 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1274 value="Suresh Vp 1 to 10_BAF.1061.1061.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1275 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1276 name="retention time" value="2430.0001" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1277 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1278 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1279 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1280 spectrumID="index=955" id="SIR_2118">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1281 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1282 peptide_ref="SINGYPIPGGGTVR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1283 calculatedMassToCharge="1386.7255556837001"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1284 experimentalMassToCharge="1387.72802734375"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1285 chargeState="1" id="SII_2118_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1286 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2130" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1287 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1288 <IonType charge="1" index="2 3 4">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1289 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1290 values="201.2282851 315.2713475 372.2926505" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1291 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1292 values="7466.9067382813 5411.126953125 15168.6279296875" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1293 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1294 values="0.1049166331880258 0.10505203318797385 0.10489103318798243" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1295 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1296 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1297 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1298 <IonType charge="1" index="1 2 4 5 7 9 11">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1299 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1300 values="175.2302247 274.2876019 432.3142901 489.344765 643.3818046 853.4633707 1073.648728" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1301 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1302 values="41686.1796875 7923.396484375 5714.796875 6444.76171875 15882.1591796875 9724.2939453125 28239.376953125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1303 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1304 values="0.11127254948800669 0.10023574948797886 0.057780949487948874 0.06679184948797001 0.02960344948803595 -0.025658450511969022 0.0749148494878682" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1305 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1306 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1307 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1308 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1309 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1310 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1311 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1312 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1313 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1314 name="MS-GF:SpecEValue" value="1.14187014E-17" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1315 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1316 name="Comet:expectation value" value="0.00836" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1317 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1318 name="theoretical mass" value="1386.7255556837001" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1319 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1320 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1321 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1322 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1323 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1324 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1325 value="Suresh Vp 1 to 10_BAF.1042.1042.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1326 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1327 name="retention time" value="2415.00006" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1328 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1329 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1330 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1331 spectrumID="index=879" id="SIR_2190">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1332 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1333 peptide_ref="FEPPAKETDPITAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1334 calculatedMassToCharge="1570.7991236837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1335 experimentalMassToCharge="1571.809936523438"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1336 chargeState="1" id="SII_2190_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1337 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2202" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1338 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1339 <IonType charge="1" index="2">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1340 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1341 values="277.1483322" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1342 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1343 values="3118.81640625" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1344 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1345 values="0.030048733188039023" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1346 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1347 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1348 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1349 <IonType charge="1" index="3 4 10">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1350 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1351 values="70.12450786" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1352 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1353 values="1723.5908203125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1354 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1355 values="0.05938201274800292" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1356 <cvParam cvRef="PRIDE" accession="PRIDE:0000252"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1357 name="immonium P" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1358 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1359 <IonType charge="1" index="1 2 3 5 7 12">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1360 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1361 values="175.1858597 246.1999213 347.2240156 557.3399899 773.3601814 1295.69305" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1362 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1363 values="9789.6005859375 2929.2880859375 2458.8120117188 73337.9609375 1881.5656738281 7643.787109375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1364 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1365 values="0.06690754948800759 0.04385514948799596 0.020270449487952646 -5.832505120224596E-4 -0.0550137505119892 -0.002343150511933345" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1366 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1367 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1368 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1369 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1370 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1371 name="PeptideShaker PSM score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1372 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1373 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1374 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1375 name="MS-GF:SpecEValue" value="7.1195654E-13" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1376 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1377 name="Comet:expectation value" value="0.0204" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1378 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1379 name="theoretical mass" value="1570.7991236837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1380 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1381 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1382 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1383 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1384 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1385 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1386 value="Suresh Vp 1 to 10_BAF.962.962.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1387 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1388 name="retention time" value="2355.00012" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1389 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1390 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1391 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1392 spectrumID="index=877" id="SIR_2192">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1393 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1394 peptide_ref="ENIDWNEGYK"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1395 calculatedMassToCharge="1266.5516716837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1396 experimentalMassToCharge="1267.614013671875"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1397 chargeState="1" id="SII_2192_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1398 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2204" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1399 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1400 <IonType charge="1" index="5">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1401 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1402 values="610.3123569" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1403 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1404 values="772.124206543" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1405 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1406 values="0.029248749488033354" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1407 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1408 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1409 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1410 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1411 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1412 name="PeptideShaker PSM score" value="11.82" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1413 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1414 name="PeptideShaker PSM confidence" value="88.31" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1415 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1416 name="MS-GF:SpecEValue" value="1.4174734E-9" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1417 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1418 name="Comet:expectation value" value="1.44" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1419 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1420 name="theoretical mass" value="1266.5516716837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1421 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1422 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1423 value="Doubtful" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1424 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1425 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1426 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1427 value="Suresh Vp 1 to 10_BAF.960.960.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1428 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1429 name="retention time" value="2355.0001" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1430 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1431 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1432 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1433 spectrumID="index=650" id="SIR_2410">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1434 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1435 peptide_ref="RAHYYVPR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1436 calculatedMassToCharge="1060.5566306837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1437 experimentalMassToCharge="1061.588256835938"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1438 chargeState="1" id="SII_2410_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1439 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2444" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1440 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1441 <IonType charge="1" index="3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1442 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1443 values="110.1696057" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1444 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1445 values="30796.568359375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1446 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1447 values="0.09833185274801792" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1448 <cvParam cvRef="PRIDE" accession="PRIDE:0000246"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1449 name="immonium H" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1450 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1451 <IonType charge="1" index="5 6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1452 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1453 values="691.3809574 790.4449559" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1454 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1455 values="18008.45703125 18244.6484375" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1456 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1457 values="0.049903933188147676 0.04548843318809759" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1458 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1459 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1460 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1461 <IonType charge="1" index="2 4 5 7">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1462 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1463 values="272.2662985 534.3691495 697.4138927 905.5500069" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1464 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1465 values="47430.9765625 21202.703125 18145.48046875 227399.15625" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1466 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1467 values="0.09458234948795052 0.06569934948799983 0.04712254948799455 0.08721074948800833" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1468 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1469 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1470 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1471 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1472 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1473 name="PeptideShaker PSM score" value="36.41" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1474 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1475 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1476 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1477 name="MS-GF:SpecEValue" value="4.67423E-10" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1478 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1479 name="Comet:expectation value" value="0.0197" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1480 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1481 name="theoretical mass" value="1060.5566306837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1482 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1483 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1484 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1485 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1486 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1487 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1488 value="Suresh Vp 1 to 10_BAF.721.721.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1489 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1490 name="retention time" value="2175.00005" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1491 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1492 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1493 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_1-10.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1494 spectrumID="index=629" id="SIR_2430">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1495 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1496 peptide_ref="RAHYYVPR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1497 calculatedMassToCharge="1060.5566306837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1498 experimentalMassToCharge="1061.542846679688"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1499 chargeState="1" id="SII_2430_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1500 <PeptideEvidenceRef peptideEvidence_ref="PepEv_2444" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1501 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1502 <IonType charge="1" index="3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1503 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1504 values="110.1528947" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1505 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1506 values="7740.4907226563" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1507 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1508 values="0.08162085274801711" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1509 <cvParam cvRef="PRIDE" accession="PRIDE:0000246"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1510 name="immonium H" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1511 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1512 <IonType charge="1" index="6">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1513 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1514 values="790.3940182" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1515 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1516 values="3700.0583496094" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1517 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1518 values="-0.005449266811865527" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1519 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1520 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1521 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1522 <IonType charge="1" index="1 2 4 7">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1523 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1524 values="175.2001863 272.2404794 534.3261124 905.4964172" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1525 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1526 values="5039.2456054688 10074.015625 3758.7592773438 44691.39453125" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1527 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1528 values="0.08123414948801155 0.06876324948797219 0.022662249488007546 0.03362104948803335" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1529 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1530 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1531 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1532 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1533 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1534 name="PeptideShaker PSM score" value="42.41" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1535 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1536 name="PeptideShaker PSM confidence" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1537 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1538 name="MS-GF:SpecEValue" value="1.0257421E-10" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1539 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1540 name="Comet:expectation value" value="0.0136" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1541 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1542 name="theoretical mass" value="1060.5566306837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1543 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1544 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1545 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1546 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1547 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1548 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1549 value="Suresh Vp 1 to 10_BAF.699.699.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1550 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1551 name="retention time" value="2160.00005" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1552 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1553 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1554 <SpectrumIdentificationResult spectraData_ref="ma201_Vp_11-20.mzML.mgf"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1555 spectrumID="index=3423" id="SIR_3090">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1556 <SpectrumIdentificationItem passThreshold="true" rank="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1557 peptide_ref="SKIPFIVIFDPIEAAR"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1558 calculatedMassToCharge="1814.9930716837"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1559 experimentalMassToCharge="1816.009765625" chargeState="1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1560 id="SII_3090_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1561 <PeptideEvidenceRef peptideEvidence_ref="PepEv_3117" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1562 <Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1563 <IonType charge="1" index="2 3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1564 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1565 values="216.0187281 329.0569005" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1566 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1567 values="274.1675720215 210.1901092529" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1568 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1569 values="-0.0791543668119914 -0.1250459668120243" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1570 <cvParam cvRef="PSI-MS" accession="MS:1001221"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1571 name="frag: b ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1572 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1573 <IonType charge="1" index="4 11">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1574 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1575 values="70.03571772" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1576 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1577 values="113.7114257813" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1578 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1579 values="-0.029408127251997485" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1580 <cvParam cvRef="PRIDE" accession="PRIDE:0000252"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1581 name="immonium P" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1582 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1583 <IonType charge="1" index="1 3">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1584 <FragmentArray measure_ref="Measure_MZ"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1585 values="175.0660555 317.0504645" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1586 <FragmentArray measure_ref="Measure_Int"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1587 values="396.195098877 242.8236083984" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1588 <FragmentArray measure_ref="Measure_Error"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1589 values="-0.05289665051199677 -0.14271565051205926" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1590 <cvParam cvRef="PSI-MS" accession="MS:1001220"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1591 name="frag: y ion" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1592 </IonType>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1593 </Fragmentation>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1594 <cvParam cvRef="PSI-MS" accession="MS:1002466"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1595 name="PeptideShaker PSM score" value="11.29" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1596 <cvParam cvRef="PSI-MS" accession="MS:1002467"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1597 name="PeptideShaker PSM confidence" value="84.21" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1598 <cvParam cvRef="PSI-MS" accession="MS:1002052"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1599 name="MS-GF:SpecEValue" value="6.26492E-9" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1600 <cvParam cvRef="PSI-MS" accession="MS:1002257"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1601 name="Comet:expectation value" value="0.248" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1602 <cvParam cvRef="PSI-MS" accession="MS:1001117"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1603 name="theoretical mass" value="1814.9930716837" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1604 <cvParam cvRef="PSI-MS" accession="MS:1002543"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1605 name="PeptideShaker PSM confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1606 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1607 </SpectrumIdentificationItem>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1608 <cvParam cvRef="PSI-MS" accession="MS:1000796"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1609 name="spectrum title"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1610 value="Suresh Vp 11 to 20_BAF.3773.3773.1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1611 <cvParam cvRef="PSI-MS" accession="MS:1000894"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1612 name="retention time" value="6360.00001" unitCvRef="UO"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1613 unitAccession="UO:0000010" unitName="seconds" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1614 </SpectrumIdentificationResult>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1615 <cvParam cvRef="PSI-MS" accession="MS:1002439"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1616 name="final PSM list" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1617 </SpectrumIdentificationList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1618 <ProteinDetectionList id="Protein_groups">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1619 <ProteinAmbiguityGroup id="PAG_0">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1620 <ProteinDetectionHypothesis id="PAG_0_1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1621 dBSequence_ref="JEMP01000193.1_rev_g3500.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1622 passThreshold="false">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1623 <PeptideHypothesis peptideEvidence_ref="PepEv_1">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1624 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1625 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1626 <cvParam cvRef="PSI-MS" accession="MS:1002403"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1627 name="group representative" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1628 <cvParam cvRef="PSI-MS" accession="MS:1002401"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1629 name="leading protein" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1630 <cvParam cvRef="PSI-MS" accession="MS:1001093"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1631 name="sequence coverage" value="0.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1632 </ProteinDetectionHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1633 <cvParam cvRef="PSI-MS" accession="MS:1002470"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1634 name="PeptideShaker protein group score" value="0.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1635 <cvParam cvRef="PSI-MS" accession="MS:1002471"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1636 name="PeptideShaker protein group confidence"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1637 value="0.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1638 <cvParam cvRef="PSI-MS" accession="MS:1002545"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1639 name="PeptideShaker protein confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1640 value="Not Validated" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1641 <cvParam cvRef="PSI-MS" accession="MS:1002415"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1642 name="protein group passes threshold" value="false" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1643 </ProteinAmbiguityGroup>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1644 <ProteinAmbiguityGroup id="PAG_4">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1645 <ProteinDetectionHypothesis id="PAG_4_1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1646 dBSequence_ref="JEMP01000061.1_rev_g10170.t1"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1647 passThreshold="true">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1648 <PeptideHypothesis peptideEvidence_ref="PepEv_3117">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1649 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_5_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1650 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_3090_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1651 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1652 <PeptideHypothesis peptideEvidence_ref="PepEv_232">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1653 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_232_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1654 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1655 <PeptideHypothesis peptideEvidence_ref="PepEv_266">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1656 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_266_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1657 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1658 <PeptideHypothesis peptideEvidence_ref="PepEv_532">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1659 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_531_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1660 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1661 <PeptideHypothesis peptideEvidence_ref="PepEv_663">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1662 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_662_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1663 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1664 <PeptideHypothesis peptideEvidence_ref="PepEv_963">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1665 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_960_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1666 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1667 <PeptideHypothesis peptideEvidence_ref="PepEv_1108">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1668 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1102_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1669 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1670 <PeptideHypothesis peptideEvidence_ref="PepEv_1474">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1671 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1467_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1672 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1673 <PeptideHypothesis peptideEvidence_ref="PepEv_1796">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1674 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1788_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1675 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1676 <PeptideHypothesis peptideEvidence_ref="PepEv_1829">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1677 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1821_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1678 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1679 <PeptideHypothesis peptideEvidence_ref="PepEv_1958">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1680 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1949_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1681 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1682 <PeptideHypothesis peptideEvidence_ref="PepEv_2003">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1683 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_1993_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1684 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1685 <PeptideHypothesis peptideEvidence_ref="PepEv_2093">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1686 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2082_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1687 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1688 <PeptideHypothesis peptideEvidence_ref="PepEv_2130">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1689 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2101_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1690 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2118_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1691 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1692 <PeptideHypothesis peptideEvidence_ref="PepEv_2202">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1693 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2190_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1694 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1695 <PeptideHypothesis peptideEvidence_ref="PepEv_2204">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1696 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2192_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1697 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1698 <PeptideHypothesis peptideEvidence_ref="PepEv_2444">
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1699 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2410_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1700 <SpectrumIdentificationItemRef spectrumIdentificationItem_ref="SII_2430_1" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1701 </PeptideHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1702 <cvParam cvRef="PSI-MS" accession="MS:1002403"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1703 name="group representative" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1704 <cvParam cvRef="PSI-MS" accession="MS:1002401"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1705 name="leading protein" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1706 <cvParam cvRef="PSI-MS" accession="MS:1001093"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1707 name="sequence coverage" value="0.28" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1708 </ProteinDetectionHypothesis>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1709 <cvParam cvRef="PSI-MS" accession="MS:1002470"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1710 name="PeptideShaker protein group score" value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1711 <cvParam cvRef="PSI-MS" accession="MS:1002471"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1712 name="PeptideShaker protein group confidence"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1713 value="100.0" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1714 <cvParam cvRef="PSI-MS" accession="MS:1002545"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1715 name="PeptideShaker protein confidence type"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1716 value="Confident" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1717 <cvParam cvRef="PSI-MS" accession="MS:1002415"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1718 name="protein group passes threshold" value="true" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1719 </ProteinAmbiguityGroup>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1720 <cvParam cvRef="PSI-MS" accession="MS:1002404"
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1721 name="count of identified proteins" value="612" />
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1722 </ProteinDetectionList>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1723 </AnalysisData>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1724 </DataCollection>
68d8c9e521d7 planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
iracooke
parents:
diff changeset
1725 </MzIdentML>