Mercurial > repos > iracooke > protk_proteogenomics
comparison test-data/small_combined.gff @ 0:28067ed4ea0e draft
Docker support and update for protk 1.4
author | iracooke |
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date | Thu, 26 Mar 2015 20:11:34 -0400 |
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-1:000000000000 | 0:28067ed4ea0e |
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1 ##gff-version 3 | |
2 scaffold10 sixframe CDS 513537 514187 . + 0 ID=scaffold10_frame_3_orf_6477 | |
3 scaffold10 sixframe CDS 346373 347986 . - 0 ID=scaffold10_frame_6_orf_3129 | |
4 # start gene g447 | |
5 scaffold10 AUGUSTUS gene 195564 196835 0.75 + . ID=g447 | |
6 scaffold10 AUGUSTUS transcript 195564 196835 0.75 + . ID=g447.t1;Parent=g447 | |
7 scaffold10 AUGUSTUS start_codon 195564 195566 . + 0 Parent=g447.t1 | |
8 scaffold10 AUGUSTUS intron 195714 195776 0.93 + . Parent=g447.t1 | |
9 scaffold10 AUGUSTUS CDS 195564 195713 0.82 + 0 ID=g447.t1.cds;Parent=g447.t1 | |
10 scaffold10 AUGUSTUS CDS 195777 196835 0.92 + 0 ID=g447.t1.cds;Parent=g447.t1 | |
11 scaffold10 AUGUSTUS stop_codon 196833 196835 . + 0 Parent=g447.t1 | |
12 # coding sequence = [atggcggacaatagagattacgcgccagatactctggccgttcacgccgacgatgcgatgaactcatatacagatgtcg | |
13 # cgcctgctttacacgtttctacaacctaccggtatgataattcaagactggtcccgatttcagatgaagagctagatcccctcaccgccctccctgta | |
14 # tactcccgcctctcggccccaaacatctcgcgcctcgaacttatactgagctccctgacgaacggacaggcactgacttattcgtctggtttaagtgc | |
15 # atttcatgccatgcttgtgtttttacgaccgaaagttatcgctatcagcgacggctaccacggatgtcatggtgttattgctatactggaaaaattat | |
16 # acggattgaagaaggtcaacctctgggatgagaaggaatgggatactttcggtttcggcgaaggcgatgtggtacacgtcgaaactcctctcaatcct | |
17 # accggcgaagccatcaatcttgaggttttcagggagaaagctaggaaaaggggcgcgtatctgacagttgattcgacgtttgggccgccggggttgca | |
18 # ggatccgttcgtgcaaggggcagatgtggttatgcattctgggaccaagtattttggaggacatagtgatatgctttgtggtgtcttggttgttcgga | |
19 # aagaaaagaaagaatggattagggggttgtggaatgagaggatgtatttagggagtgtaatggggaatatggagagttggcttggtgtgaggagtttg | |
20 # aggacattggagttgagggtggcgaggcagagtaagaatgctgagagtattgtgaagtggcttgacgcttccttgcggggggagggggatgatgccgt | |
21 # cgttgtacagaagacggttttgaagattcagcatgcgagtttgcagaaggatgatatggattggattaagacgcaaatgccgggtgggtttggaccgg | |
22 # tgtttgtgatatggatgaagtcgatgcagttagcaagggctcttcccgggaagctgaagctatttcatcatgctacgagtcttggaggcgtggaaagt | |
23 # ctgattgaatggaggaaaatgagcgatagcggtgtagatgtcagagtgttgagagtcagcataggtgtagagcactgggaagacctgagggccgactt | |
24 # cttggaagggttcaaggctttggctctgtcggacgaagtaaatggagcataa] | |
25 # protein sequence = [MADNRDYAPDTLAVHADDAMNSYTDVAPALHVSTTYRYDNSRLVPISDEELDPLTALPVYSRLSAPNISRLELILSSL | |
26 # TNGQALTYSSGLSAFHAMLVFLRPKVIAISDGYHGCHGVIAILEKLYGLKKVNLWDEKEWDTFGFGEGDVVHVETPLNPTGEAINLEVFREKARKRGA | |
27 # YLTVDSTFGPPGLQDPFVQGADVVMHSGTKYFGGHSDMLCGVLVVRKEKKEWIRGLWNERMYLGSVMGNMESWLGVRSLRTLELRVARQSKNAESIVK | |
28 # WLDASLRGEGDDAVVVQKTVLKIQHASLQKDDMDWIKTQMPGGFGPVFVIWMKSMQLARALPGKLKLFHHATSLGGVESLIEWRKMSDSGVDVRVLRV | |
29 # SIGVEHWEDLRADFLEGFKALALSDEVNGA] | |
30 # end gene g447 | |
31 ### |