Mercurial > repos > iracooke > protk_proteogenomics
view test-data/augustus_sample.gff @ 2:68d8c9e521d7 draft
planemo upload for repository https://github.com/iracooke/protk-galaxytools/blob/master/protk-proteogenomics/.shed.yml commit 24e0fef2496984648a8a5cd5bff4d6b9b634a302-dirty
| author | iracooke |
|---|---|
| date | Tue, 20 Oct 2015 20:34:50 -0400 |
| parents | 28067ed4ea0e |
| children |
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##gff-version 3 # This output was generated with AUGUSTUS (version 2.5.5). # AUGUSTUS is a gene prediction tool for eukaryotes written by Mario Stanke (mario.stanke@uni-greifswald.de) # and Oliver Keller (keller@cs.uni-goettingen.de). # Please cite: Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008), # Using native and syntenically mapped cDNA alignments to improve de novo gene finding # Bioinformatics 24: 637-644, doi 10.1093/bioinformatics/btn013 # No extrinsic information on sequences given. # Initialising the parameters ... # venturia_inaequalis version. Use default transition matrix. # Looks like /home/virtualdan/winshare/vp/final_vp_assembly/Pirina.100.fasta is in fasta format. # We have hints for 0 sequences and for 0 of the sequences in the input set. # # ----- prediction on sequence number 1 (length = 532736, name = scaffold14) ----- # # Predicted genes for sequence number 1 on both strands # start gene g1 scaffold14 AUGUSTUS gene 2517 3803 . - . ID=g1 scaffold14 AUGUSTUS transcript 2517 3803 0.92 - . ID=g1.t1;Parent=g1 scaffold14 AUGUSTUS stop_codon 2517 2519 . - 0 Parent=g1.t1 scaffold14 AUGUSTUS CDS 2517 3803 0.92 - 0 ID=g1.t1.cds;Parent=g1.t1 scaffold14 AUGUSTUS start_codon 3801 3803 . - 0 Parent=g1.t1 # coding sequence = [atggcagggctagcagcaggcattgttggtgtcgtgtcagctggtaccaaagtcgccatcgtcctttcgcagtatggca # atgaagtgggagcagctggccaagaagcgcgaatgatcgcgtcggaaatccgaggatcatgcacagttctcacgaccctccactcgacattgaaacat # gtccagacatcgccgtactacgcgaattgcgctgaactgatcagcgatatgaccgatgcgagtctggagatgtatacggaaatcatggaggtcgtcga # gggattgtcggcaatgacgagcgacagcaagatgaatttgaggaagcggctgctgtggacctttcaaaagccgaagatcgttatgttgagaacggcac # tggaggcctatagatcgaatttggctcttatgcttggaacgttggatatggctgagaaggcctcgcgaagctacgttgctttgactgaggagattgtg # caggaagatgaaatggactgcgcaaagcttcaagacctacaactggaacaacaaatgtctctgcttaaggttcaagagttggacccggaaagtatcga # gcttccgcctagcccaacgggcgcagggcggggattttgggggtcgtcaaataaagaatctgcatttccagtcgaggagggttatgtcagtgccctga # gagaagagattgcgactctcaagaggagccgaactgtctacctgacagaccccgaaaaggtgcgcgatcgagtagctcgacagagcaatcgtttgtcc # caactcctcgtccaggatcagaggagaatttcgcgaagatggtctcaatccctgccagagagacgtatgagcatgtacagcgacttggcagcagagag # gtcacggtcgcctacgagtacgcctggcagctcatcagcctccccgagcgaatccagcgatgatctatccagcgattatgcccaggtgaacgaaccca # tggttagagacttttatgcttggatgtctgcgcaaactggcgttcagcggagcattgtgcttcgacagctgcaagcgcggtttggtgatgggcgaggg # acaactgtccgcaagcccgtcaacggtgttggaatccatccaggagcaagcgaggacacactatgcgccgatgtctccaagcttgaattggagaagga # tgcagttgcagcagagacctacgagagacaggctgagccagctcctgtggttggagccagtaaggaaaagaagagctcgttcttgaagaggtcaatgg # ggttgaaaagacgaacgccgtcagcgtcgtga] # protein sequence = [MAGLAAGIVGVVSAGTKVAIVLSQYGNEVGAAGQEARMIASEIRGSCTVLTTLHSTLKHVQTSPYYANCAELISDMTD # ASLEMYTEIMEVVEGLSAMTSDSKMNLRKRLLWTFQKPKIVMLRTALEAYRSNLALMLGTLDMAEKASRSYVALTEEIVQEDEMDCAKLQDLQLEQQM # SLLKVQELDPESIELPPSPTGAGRGFWGSSNKESAFPVEEGYVSALREEIATLKRSRTVYLTDPEKVRDRVARQSNRLSQLLVQDQRRISRRWSQSLP # ERRMSMYSDLAAERSRSPTSTPGSSSASPSESSDDLSSDYAQVNEPMVRDFYAWMSAQTGVQRSIVLRQLQARFGDGRGTTVRKPVNGVGIHPGASED # TLCADVSKLELEKDAVAAETYERQAEPAPVVGASKEKKSSFLKRSMGLKRRTPSAS] # end gene g1 ### # start gene g2 scaffold14 AUGUSTUS gene 6798 7541 . - . ID=g2 scaffold14 AUGUSTUS transcript 6798 7541 0.56 - . ID=g2.t1;Parent=g2 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t1 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t1 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t1 scaffold14 AUGUSTUS intron 7275 7401 0.63 - . Parent=g2.t1 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t1.cds;Parent=g2.t1 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t1.cds;Parent=g2.t1 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t1.cds;Parent=g2.t1 scaffold14 AUGUSTUS CDS 7402 7541 0.59 - 0 ID=g2.t1.cds;Parent=g2.t1 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t1 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcagtatg # tcacacccctcagcaaccctctcctcgacgttgaacggatcttccaattttcgccattgcaccgcaagcatcccggtggtcgtggtctcgctggtggt # cagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcgatacttccacaagcaaggcaaccacttctggaa # gccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctccaacaagaagtccgacacagctccagttctcg # acctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcgtccgcgcccgatacttctccgcagaagccgaa # aagaagatcaaggaagctggcggagtcgtccagttggtcggttag] # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKQYVTPLSNPLLDVERIFQFSPLHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKV # GMRYFHKQGNHFWKPTINLDKLWSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG] scaffold14 AUGUSTUS transcript 6798 7541 0.32 - . ID=g2.t2;Parent=g2 scaffold14 AUGUSTUS stop_codon 6798 6800 . - 0 Parent=g2.t2 scaffold14 AUGUSTUS intron 6936 6986 1 - . Parent=g2.t2 scaffold14 AUGUSTUS intron 7068 7117 1 - . Parent=g2.t2 scaffold14 AUGUSTUS intron 7275 7467 0.37 - . Parent=g2.t2 scaffold14 AUGUSTUS CDS 6798 6935 0.97 - 0 ID=g2.t2.cds;Parent=g2.t2 scaffold14 AUGUSTUS CDS 6987 7067 1 - 0 ID=g2.t2.cds;Parent=g2.t2 scaffold14 AUGUSTUS CDS 7118 7274 1 - 1 ID=g2.t2.cds;Parent=g2.t2 scaffold14 AUGUSTUS CDS 7468 7541 0.33 - 0 ID=g2.t2.cds;Parent=g2.t2 scaffold14 AUGUSTUS start_codon 7539 7541 . - 0 Parent=g2.t2 # coding sequence = [atgcctaccagattatccaacacccgcaagcaccgcggtcacgtctctgccggtcacggtcgtgtcggcaagcaccgca # agcatcccggtggtcgtggtctcgctggtggtcagcaccaccacaggaccaacatggataaataccatccaggttacttcggaaaggtcggtatgcga # tacttccacaagcaaggcaaccacttctggaagccaaccatcaacttggacaagctttggtccctcgttcctctcgagcagcgcgaaaagtacatctc # caacaagaagtccgacacagctccagttctcgacctcctctccttcggttactcaaaggtcctcggaaagggtcgtctcccagaaatcccactcgtcg # tccgcgcccgatacttctccgcagaagccgaaaagaagatcaaggaagctggcggagtcgtccagttggtcggttag] # protein sequence = [MPTRLSNTRKHRGHVSAGHGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHPGYFGKVGMRYFHKQGNHFWKPTINLDKL # WSLVPLEQREKYISNKKSDTAPVLDLLSFGYSKVLGKGRLPEIPLVVRARYFSAEAEKKIKEAGGVVQLVG] # end gene g2 ### # start gene g3 scaffold14 AUGUSTUS gene 8211 8576 0.98 + . ID=g3 scaffold14 AUGUSTUS transcript 8211 8576 0.98 + . ID=g3.t1;Parent=g3 scaffold14 AUGUSTUS start_codon 8211 8213 . + 0 Parent=g3.t1 scaffold14 AUGUSTUS CDS 8211 8576 0.98 + 0 ID=g3.t1.cds;Parent=g3.t1 scaffold14 AUGUSTUS stop_codon 8574 8576 . + 0 Parent=g3.t1 # coding sequence = [atgtcaaaacaactctccacaaaggaagtttccacacacaaatcagtcgaagagggtctctggatcataatcgacaacg # aagtctacgacgtcacaaaattcatcgaagaacaccccggcggtccaaagatcctaaagcgcgtcggtgggaaagatgccagcaagcaattctggaag # gcaagcaatcccatccccttacaaccatctcaccaaaaacatccactctcacaccctctaccatcatctgttcttataggtgcacgtgtgctaacctt # atccgcgtcacagtaccacagcgacaacgtcctaaaaaaatacaaacctaaactcatgatcggaagcgtcaaagaagacgccaagttatag] # protein sequence = [MSKQLSTKEVSTHKSVEEGLWIIIDNEVYDVTKFIEEHPGGPKILKRVGGKDASKQFWKASNPIPLQPSHQKHPLSHP # LPSSVLIGARVLTLSASQYHSDNVLKKYKPKLMIGSVKEDAKL] # end gene g3 ### # start gene g4 scaffold14 AUGUSTUS gene 9661 12081 . - . ID=g4 scaffold14 AUGUSTUS transcript 9661 12081 0.96 - . ID=g4.t1;Parent=g4 scaffold14 AUGUSTUS stop_codon 9661 9663 . - 0 Parent=g4.t1 scaffold14 AUGUSTUS intron 10248 10299 0.97 - . Parent=g4.t1 scaffold14 AUGUSTUS intron 10533 10666 0.99 - . Parent=g4.t1 scaffold14 AUGUSTUS CDS 9661 10247 0.97 - 2 ID=g4.t1.cds;Parent=g4.t1 scaffold14 AUGUSTUS CDS 10300 10532 0.98 - 1 ID=g4.t1.cds;Parent=g4.t1 scaffold14 AUGUSTUS CDS 10667 12081 0.98 - 0 ID=g4.t1.cds;Parent=g4.t1 scaffold14 AUGUSTUS start_codon 12079 12081 . - 0 Parent=g4.t1 # coding sequence = [atggagacctatcaaggcaaggtccagacgccgcaggacgccatcatccttttcgaagcatgtcgactaggcctcacac # cgcgtgtgcagaggagactatcggagaaggagaggcaacagatcaaatctggctcggtattcgtgtgggatgaacgcgaagctggcatgaggaggtgg # actgacgggaaatcatggagcgcaagtcgcgtatctggtagctttctcacctatcgcgaaatggaaggaaagagaggagggactggcctgcctgcagg # cgctacaccacctgctctcaggaagtcaagcagtggaacgagaagctccgccaactcgaacaatggcggttcagaggacgacgaggaaggaccagacg # ggtacaagtacaaggccgacggactcatgaaacagtctttcagtatcaccacctcagacggccgacatcttcacctcatcagctacttcgcaagaaat # cctgcacatccattaaaacaaccatccacggatccgcaactgcgcaatattgttccgcaaaaaggcatgtaccccgaggctacagtcaatgaagccac # gaacataccccctgtcactcgaggacctatgggggggacatcgccgcatcctcctgcgcatccgcctccacagatgtacgtcgcagcctatccatttc # caccgcctccaggataccaagcaggaccaatgcatcatcactaccctccacaaggctggccgccaagcccgggacatctaggccctggaggagtacca # cctggagcattttattatcctgctcctcctccgggatatgtttatccgaattcaccatacgcgccatccccatatccgtatggccaccctcctccgca # cgcgcaggagagaggtccacctccgccgcctcaatcaagtctgccccctctgagtggcccgatacatccctctgctgggcaatgggcccctccagctg # cgcgtacatcctcggccacgtatgcgcaaagcaggcctcctacatccttgcaagagagctacagccgctcggcagcagaacagagacaagaagagaca # tcgcgcgctcctggtccgcagctagcacccgtagttgccttccagaacaaacctccgactccaccagagagcaggaatggcgcgacaccgcctgcgaa # gagctacccaaccgaccctctaccaacccgcgaaactaatactactactggacctacaaagacctttcccagtatcaaagcattgattaacggcgatg # tgataacatcgagacgagaagaggaccggacacgcactcgatctcgcagtcgaagcccgctaggaagcagaatccgcgatgttcccagtgcgatggca # gccggaggccgagagagagaccgtagcgatttgaagaggttggatgcccaacttctcaaatcttctggtctcgagtcttcagatggcaacgggaagct # tgcacaaaaccaccctggtgcacacagcaagccaatttcgagaagtatcgatgttattgcaaaagtcatccccggtcatgttcttgccacgatgcctg # aaaatatcgaacttgaacctcaagacttcggaagatggccactacaatcgggtaacggacggtatacggagatacagccaaccccaacaagttccgaa # gatgggcaaaagctgcaacttcagacgatgcccgacgataacttcgggcgggttatggaacctagcctgaaggaagttcttgatggcatgactggaag # acagcgaggtctgggccagctcgggcaaatgcgtcttactactcaagatgtcaatagcaaacgatttgatctgtaccaagctctcaaatacgctacac # catcatccaccatcactcggattttgaatgaattgaagactggtgtcctgccctcagaaaagttgctgcgagaaacgaatatcggcgtggaagttgac # gggctgcgctggttgacaaaaatcccagttatcgcaaagctcagcaccgagatcgtcaatgaatggcgcactgttatagagtctggtcctcgtcctca # tccctcaaacgatgagatctttgggccttactggcggcttagcaacaatttttacgtttctaatcatggcagcgagagcccgtttcccagactatcac # ttggaaacgagaagcttggtcttggttccctgaacgacaacaagaatctcggaacagaaaatggaatgatacccaagaccaaggaggataggttataa] # protein sequence = [METYQGKVQTPQDAIILFEACRLGLTPRVQRRLSEKERQQIKSGSVFVWDEREAGMRRWTDGKSWSASRVSGSFLTYR # EMEGKRGGTGLPAGATPPALRKSSSGTRSSANSNNGGSEDDEEGPDGYKYKADGLMKQSFSITTSDGRHLHLISYFARNPAHPLKQPSTDPQLRNIVP # QKGMYPEATVNEATNIPPVTRGPMGGTSPHPPAHPPPQMYVAAYPFPPPPGYQAGPMHHHYPPQGWPPSPGHLGPGGVPPGAFYYPAPPPGYVYPNSP # YAPSPYPYGHPPPHAQERGPPPPPQSSLPPLSGPIHPSAGQWAPPAARTSSATYAQSRPPTSLQESYSRSAAEQRQEETSRAPGPQLAPVVAFQNKPP # TPPESRNGATPPAKSYPTDPLPTRETNTTTGPTKTFPSIKALINGDVITSRREEDRTRTRSRSRSPLGSRIRDVPSAMAAGGRERDRSDLKRLDAQLL # KSSGLESSDGNGKLAQNHPGAHSKPISRSIDVIAKVIPGHVLATMPENIELEPQDFGRWPLQSGNGRYTEIQPTPTSSEDGQKLQLQTMPDDNFGRVM # EPSLKEVLDGMTGRQRGLGQLGQMRLTTQDVNSKRFDLYQALKYATPSSTITRILNELKTGVLPSEKLLRETNIGVEVDGLRWLTKIPVIAKLSTEIV # NEWRTVIESGPRPHPSNDEIFGPYWRLSNNFYVSNHGSESPFPRLSLGNEKLGLGSLNDNKNLGTENGMIPKTKEDRL] # end gene g4 ### # start gene g5 scaffold14 AUGUSTUS gene 11112 11486 0.43 + . ID=g5 scaffold14 AUGUSTUS transcript 11112 11486 0.43 + . ID=g5.t1;Parent=g5 scaffold14 AUGUSTUS start_codon 11112 11114 . + 0 Parent=g5.t1 scaffold14 AUGUSTUS CDS 11112 11486 0.43 + 0 ID=g5.t1.cds;Parent=g5.t1 scaffold14 AUGUSTUS stop_codon 11484 11486 . + 0 Parent=g5.t1 # coding sequence = [atgtacgcgcagctggaggggcccattgcccagcagagggatgtatcgggccactcagagggggcagacttgattgagg # cggcggaggtggacctctctcctgcgcgtgcggaggagggtggccatacggatatggggatggcgcgtatggtgaattcggataaacatatcccggag # gaggagcaggataataaaatgctccaggtggtactcctccagggcctagatgtcccgggcttggcggccagccttgtggagggtagtgatgatgcatt # ggtcctgcttggtatcctggaggcggtggaaatggataggctgcgacgtacatctgtggaggcggatgcgcaggaggatgcggcgatgtcccccccat # ag] # protein sequence = [MYAQLEGPIAQQRDVSGHSEGADLIEAAEVDLSPARAEEGGHTDMGMARMVNSDKHIPEEEQDNKMLQVVLLQGLDVP # GLAASLVEGSDDALVLLGILEAVEMDRLRRTSVEADAQEDAAMSPP] # end gene g5 ### # start gene g6 scaffold14 AUGUSTUS gene 22383 25038 0.97 + . ID=g6 scaffold14 AUGUSTUS transcript 22383 25038 0.97 + . ID=g6.t1;Parent=g6 scaffold14 AUGUSTUS start_codon 22383 22385 . + 0 Parent=g6.t1 scaffold14 AUGUSTUS intron 22637 22690 1 + . Parent=g6.t1 scaffold14 AUGUSTUS intron 22778 22830 1 + . Parent=g6.t1 scaffold14 AUGUSTUS intron 24145 24194 1 + . Parent=g6.t1 scaffold14 AUGUSTUS CDS 22383 22636 0.97 + 0 ID=g6.t1.cds;Parent=g6.t1 scaffold14 AUGUSTUS CDS 22691 22777 1 + 1 ID=g6.t1.cds;Parent=g6.t1 scaffold14 AUGUSTUS CDS 22831 24144 1 + 1 ID=g6.t1.cds;Parent=g6.t1 scaffold14 AUGUSTUS CDS 24195 25038 1 + 1 ID=g6.t1.cds;Parent=g6.t1 scaffold14 AUGUSTUS stop_codon 25036 25038 . + 0 Parent=g6.t1 # coding sequence = [atgttgatcaggtcaaatccctccttgcattaccccattacaatcacgaagctcctggcgaaaccggatcagtccgtcg # acaggttcgctccgcttttctcctacacttataagactaccgtcactgaaggcaataagtatggcgatgagccaattcagttccagaaggacttcccc # gccgagtttcagtccgagcttgagggtaccctacgcgtttggaagataaagcccggcgatgttctgtacgaatctggaattcaactagtcgacattga # cgagccatgcactcacgatactgtttttggtggcctatgtgcgaattgtggccaagaaatggacaaactagataactatctaaccaccgagagagcct # cccaacgcgccaccgtttttgcctcccacggaaacacagctctcctagtcagcaagaaggaagcaggtcggatcaatgaagaggctaaaagacgtctc # ttacagggtcgcaagctttcactagttgtggatctggatcaaaccatcattcacgccactgtcgatccaactgtggctgaatggcagcaggaccccgc # caacccaaactacgaggccgtaaagggggtgagacaattccagctggtagatgatggacctggaggtcgtggttgtaattactacatcaaattgcgac # ccggtctggaagagtttctggaagatatcgcgaagaagtacgaacttcacatctacaccatgggaaccagggcatacgcgcaaaagatcgctgagatt # gttgacccacaaaggagattttttggtgacaggatactcagcagagacgaaagtggaagcttgacgaacaagactttgcagcgcatatttcccgtcga # cacagacatggttgtcattattgacgatcgtggagatgtttggcaatggagtcccaacttaatcaaagtcactccctacgacttcttcgtcggaattg # gtgacatcaattctagctttttgccgaagaagaccgacagcatttccaaaaggactaggacacccccacccccaccgcctccagccgaaataccagag # gacaaggagactaatgatagctttgaagaagcggagtcccccaccaacggtctagcaattgacacgaccgttatactggaagactccgatgcgccgac # cttggagacacagcttgtagctatggcaggaggagacgacccctccatcatagaagagaaaagtaatacacaggcggagacattagcggcgcaagtca # cagatcgccctttgatgaagaagcaggaaatgctagacaagcttgatgaagaggaggaagccaaagaaaacagtgaagaggagcgacctgtggaaacc # acacccgataccaaacaacgccacaatcttctacacgatgatgatgacgaattgcgacatcttcaggccaatctggagagcatccaccgactgtttta # tgaagaatacgaccagaatatcatagcaagtccgccgaggctttctcagcttcggggcgagagatcagcgaaaaagactccggtcgacaaccttgagc # tcgtgccggacgtcaaagatatcatgccacggatgaaattggatgttttgaaacatgtggtcatatgcttcacgggggtcattcctcaaggcttaaac # catgaaacatctgacattggcatgtgggcacgatcttttggagccagggtgtcaccaaatttgacaaagtcgaccacgcatgttgttgcccacaaaga # tcgacgaacaagtaaagttcgacaggcggcaaggcatccgaacatcaaaatcgtcgcaaccagctggctactcgaatgctttgtgcagtgggttgcgg # ctcctgagggaccgcatacgatcaaagtggagagcgacgagcatgatgctcatgactcgctgccattcgaggagctagaagaggcttcgatgttaact # ccatcagaagacggaggcgcggacgatgctgtcttgccttcggaagtggaggaagcggacgaagaacccaattccccagtcttggacatactagaaaa # cgtcgaatggggtgatctagaagatgaaatgaaagacttctacgactcggaggacgaaactgaagctgaagataccgatgaaggccatgacgaaggca # tggagtcagatgcaagcgggaaaagtggacgcagctcacgaagcacctcgtcacgaaaagctaaacgcaagcgaaggacggaatcggttaacggcgac # tatgaagaagcgggcgaaagcacatcggcgttgcagaagcgacggaaaatggcggcagagcgtactacaggacttgccaacgtggagacgttggagaa # tccaagtgggctacccagccccgacacgacaggaccagaggaggaagcaggagagaaggacaaaggcttatcgaatggcgcagaaggcgatgtgagcg # atgacattgatgaattcgagaaagacatgatggcaatgttcgacaaggacagtgatgccgaggattag] # protein sequence = [MLIRSNPSLHYPITITKLLAKPDQSVDRFAPLFSYTYKTTVTEGNKYGDEPIQFQKDFPAEFQSELEGTLRVWKIKPG # DVLYESGIQLVDIDEPCTHDTVFGGLCANCGQEMDKLDNYLTTERASQRATVFASHGNTALLVSKKEAGRINEEAKRRLLQGRKLSLVVDLDQTIIHA # TVDPTVAEWQQDPANPNYEAVKGVRQFQLVDDGPGGRGCNYYIKLRPGLEEFLEDIAKKYELHIYTMGTRAYAQKIAEIVDPQRRFFGDRILSRDESG # SLTNKTLQRIFPVDTDMVVIIDDRGDVWQWSPNLIKVTPYDFFVGIGDINSSFLPKKTDSISKRTRTPPPPPPPAEIPEDKETNDSFEEAESPTNGLA # IDTTVILEDSDAPTLETQLVAMAGGDDPSIIEEKSNTQAETLAAQVTDRPLMKKQEMLDKLDEEEEAKENSEEERPVETTPDTKQRHNLLHDDDDELR # HLQANLESIHRLFYEEYDQNIIASPPRLSQLRGERSAKKTPVDNLELVPDVKDIMPRMKLDVLKHVVICFTGVIPQGLNHETSDIGMWARSFGARVSP # NLTKSTTHVVAHKDRRTSKVRQAARHPNIKIVATSWLLECFVQWVAAPEGPHTIKVESDEHDAHDSLPFEELEEASMLTPSEDGGADDAVLPSEVEEA # DEEPNSPVLDILENVEWGDLEDEMKDFYDSEDETEAEDTDEGHDEGMESDASGKSGRSSRSTSSRKAKRKRRTESVNGDYEEAGESTSALQKRRKMAA # ERTTGLANVETLENPSGLPSPDTTGPEEEAGEKDKGLSNGAEGDVSDDIDEFEKDMMAMFDKDSDAED] # end gene g6 ### # start gene g7 scaffold14 AUGUSTUS gene 25584 27469 0.98 + . ID=g7 scaffold14 AUGUSTUS transcript 25584 27469 0.98 + . ID=g7.t1;Parent=g7 scaffold14 AUGUSTUS start_codon 25584 25586 . + 0 Parent=g7.t1 scaffold14 AUGUSTUS intron 25737 25813 0.99 + . Parent=g7.t1 scaffold14 AUGUSTUS intron 26987 27043 1 + . Parent=g7.t1 scaffold14 AUGUSTUS CDS 25584 25736 0.98 + 0 ID=g7.t1.cds;Parent=g7.t1 scaffold14 AUGUSTUS CDS 25814 26986 1 + 0 ID=g7.t1.cds;Parent=g7.t1 scaffold14 AUGUSTUS CDS 27044 27469 1 + 0 ID=g7.t1.cds;Parent=g7.t1 scaffold14 AUGUSTUS stop_codon 27467 27469 . + 0 Parent=g7.t1 # coding sequence = [atgaccacagacaaccccgaggctaagatggtggaagtggctcagccaacgaagatggccgtcgtgccagtcgagaagg # aggttccgaaacgtccttccaagttgcgcttcatggacctctcggtcgacatcaagacattgattgtcagccatgtccatcggccaaccgaactcaag # aatctctgcctcacctgctcgcagatgcacaagattaccgtccggaaactgtatcacgaagtcacgctagaggtcggttcgtctaccgatgccaaact # cacctccttcatcaatccccgcaatatcggcctccctcacattcggaagctcgacctatacctggctgaggttgccgacaagtgcaaccagctacaac # aggctcactttgccatacggatgatactagagttccttccagaaaacatactcgagaaattctcatggcatccttggtcgcctttcctggccgacaat # ttggttctactgtacaagaagcagcgacggatggagtggttagaaggcatagctctggataggaatgttctacccgagttggaaaagcaatccgactt # tgaccagatattcacaaggacgcggcggctaggactatatccggattcgcgagatgtgctcaatttctgcgccaatctgatcaagcggacaaaaaagg # tcgagaagattacgctgcatgctagtttcgatgaggactcagatcggactccaattcctagccgggagctgaatgactccagcacagatcttggtttg # ataactaggaccatgttcggccatatggagccattcgagaaatgcacacctctgtcgttgaaggatcttacactgcaaaagatcaatctccgttatgc # cgccaattcgtattgcaaattcattgatttccgcgtcatgaaggcgctccgtatatttgggtgtccgggtgccgactccctctttgccgagctatcaa # aatcgcataagttaccagagcgcttggagactctcgaattcaagcacgatgataaccaagaaaacgacgcattgaatgctttggacggcttcttgaaa # ctggtttctggcatcaaagtgctcaccatggatatctgctatgcaaagcaattaccgagcgcagatggaatcattcggcattctcgaacgttgaggga # attgaatgtgcacggctctcgtggagacggagaggaagaggaacttatcattgactttgacgatttcgagaagatatgcaagtcttgctcgtcaattg # aacagctgtcaatggcgttcccgacgaccagtctgatccgaccgatttcagactcatttcaagcattcgagaacgcgttgggagatctcgcgaacctg # attactctcaacataacgacctggcctacgaacacaccgtctacctcccgcctcccacgtaaaacctacgaaatcctcctccaatccctcgcaaactc # gggtttcgaacactcgatccaccacgcatcctcgcgcacccctcctcggtcctcgaaactcgccgtcatcgctttcggttcctctgatcgcgtatacg # atcgcgaagactccaagaaccagattatatttgtgaagggtaggcagactgatcctttcggaggggaaaagccattggcggtgcaggtcggttggtgt # ctaaggaagtttgtggagccgaggagtgatgtgcttgatttctcgttggcgaggagttgtagaccgcctactagggaaccgccggcgagtgaggatag # tgagtaa] # protein sequence = [MTTDNPEAKMVEVAQPTKMAVVPVEKEVPKRPSKLRFMDLSVDIKTLIVSHVHRPTELKNLCLTCSQMHKITVRKLYH # EVTLEVGSSTDAKLTSFINPRNIGLPHIRKLDLYLAEVADKCNQLQQAHFAIRMILEFLPENILEKFSWHPWSPFLADNLVLLYKKQRRMEWLEGIAL # DRNVLPELEKQSDFDQIFTRTRRLGLYPDSRDVLNFCANLIKRTKKVEKITLHASFDEDSDRTPIPSRELNDSSTDLGLITRTMFGHMEPFEKCTPLS # LKDLTLQKINLRYAANSYCKFIDFRVMKALRIFGCPGADSLFAELSKSHKLPERLETLEFKHDDNQENDALNALDGFLKLVSGIKVLTMDICYAKQLP # SADGIIRHSRTLRELNVHGSRGDGEEEELIIDFDDFEKICKSCSSIEQLSMAFPTTSLIRPISDSFQAFENALGDLANLITLNITTWPTNTPSTSRLP # RKTYEILLQSLANSGFEHSIHHASSRTPPRSSKLAVIAFGSSDRVYDREDSKNQIIFVKGRQTDPFGGEKPLAVQVGWCLRKFVEPRSDVLDFSLARS # CRPPTREPPASEDSE] # end gene g7 ### # start gene g8 scaffold14 AUGUSTUS gene 29180 30106 . - . ID=g8 scaffold14 AUGUSTUS transcript 29180 30106 0.76 - . ID=g8.t1;Parent=g8 scaffold14 AUGUSTUS stop_codon 29180 29182 . - 0 Parent=g8.t1 scaffold14 AUGUSTUS CDS 29180 30106 0.76 - 0 ID=g8.t1.cds;Parent=g8.t1 scaffold14 AUGUSTUS start_codon 30104 30106 . - 0 Parent=g8.t1 # coding sequence = [atgttccgagctcgcgacagtctgcgcaagctacgtagccagggtcttccatcaaccaaaatttggctccctactccta # gaagccagagacttctagcatccttcgccaaatctcgcaataccttcccatggcattacgctgtccctgcagccatgggcgcggctgtgttctcgttt # gtctttatcgcccaaagtcagaaaggttcactgccgtatccaggaggttgctgttctcgggatcggaagcctctactcgtatcatattacacagataa # accctgcactcttagggatgtgacagatattgcaggtctcatggctgcgatgtgggtatccgagcgcataaacgaacaatcatcatcgaaggatgcac # tcactgtcaaggacgaccttcttttcgatattgctagtcgcttggctttgctcagaaatggcggagtcgagggaagttctctaggaaagacagaatgc # cttcaaatgtttgccgagtcggaatcgaatcgcttgaaagactcaccgtttggtcgagagagttgcgatctcagcctgatgagtggggacgccaaaac # tgcctgggttgctgacagcattgggtacttcatcttttctgaccgcatggatgagccacatccgttatcaaagctggacgactggatagaccacttaa # tcgatcggggttcctttgtggaatcgaagttcatgactgtcttgaatgatgtagagagagtaatcatgattgagatgtacaaggaggctcgaaaggca # tatcaaaatgcagaaactcgcaaggaaatggaagctatgggacttccagttgcgtctgctcaagatatgatgctgatagatgcgatgatgcatgttta # tcggcgactcagcggagatagggttctcaaggacgtgggacacgaagatgatgttggtcattga] # protein sequence = [MFRARDSLRKLRSQGLPSTKIWLPTPRSQRLLASFAKSRNTFPWHYAVPAAMGAAVFSFVFIAQSQKGSLPYPGGCCS # RDRKPLLVSYYTDKPCTLRDVTDIAGLMAAMWVSERINEQSSSKDALTVKDDLLFDIASRLALLRNGGVEGSSLGKTECLQMFAESESNRLKDSPFGR # ESCDLSLMSGDAKTAWVADSIGYFIFSDRMDEPHPLSKLDDWIDHLIDRGSFVESKFMTVLNDVERVIMIEMYKEARKAYQNAETRKEMEAMGLPVAS # AQDMMLIDAMMHVYRRLSGDRVLKDVGHEDDVGH] # end gene g8 ### # start gene g9 scaffold14 AUGUSTUS gene 30672 31824 1 + . ID=g9 scaffold14 AUGUSTUS transcript 30672 31824 1 + . ID=g9.t1;Parent=g9 scaffold14 AUGUSTUS start_codon 30672 30674 . + 0 Parent=g9.t1 scaffold14 AUGUSTUS intron 31248 31299 1 + . Parent=g9.t1 scaffold14 AUGUSTUS CDS 30672 31247 1 + 0 ID=g9.t1.cds;Parent=g9.t1 scaffold14 AUGUSTUS CDS 31300 31824 1 + 0 ID=g9.t1.cds;Parent=g9.t1 scaffold14 AUGUSTUS stop_codon 31822 31824 . + 0 Parent=g9.t1 # coding sequence = [atgccaatcgaaaacatccaaaacccatccgcaaaacactggaactgcacaaacaccctcaacccctccatcctcccct # tccaccaatctctccccgactacgccataaccccgctcacccccctagaagctctagcagaagacctaggtataggccacatctacgtcaaagacgaa # ggcacgcgtttcggtctgcccgccttcaaaatcctaggcgcctcatgggcggtttaccgagccatcgcggctcaattgggtaaaccgacgacaacatc # actggatgatttatgcaatgctgccgaggggaggggaattcgaatcgtcacgacatcagagggaaactggggtcgagcggttgctcgaatggggaggt # atcttggggttgcggttacggtttatgtccctcggtatatggatgaagcgacacgggggaagatttcaagggaaggcgctgaggttatcctacataaa # ggcgaatacgacgattgtctatttacttgtcgacacgtctccgaggaaacgggggctcttcttgttttggatacgagttttgatgggtacacggagat # accgcagtgggtgacggatgggtactcttctatgcttgaagaagtggattcgcaactccgggctgcgattgacagaccggcgacccatgcgattgctt # ctgttggtgtggggtcgtgggctcatgccgtggtggctcattataaatccaaagatccgactgcagctgttgcgactgttgagcctaagacggcgaat # tgtcttgctacctctctcgacgccggcaagattatttcagtcaagactgacgtcaccattatgaacggcatgaattgcggaactgtgtctgacattgc # atggccgtatctgagagatggtgtcgatgcaagtgttaccgtcagtgagatgcaggcacacgaagccgttctgtatctgagagcgcatggcgtgaatg # ctggaccttgtggagcggcaccactcgccgcattgagggagttgaagaagttgaactggcttgggcttgggtcggatagcgtcgtggtactttattgc # acagaggccgcaagagcgtataaggagcctaccagcgagtaa] # protein sequence = [MPIENIQNPSAKHWNCTNTLNPSILPFHQSLPDYAITPLTPLEALAEDLGIGHIYVKDEGTRFGLPAFKILGASWAVY # RAIAAQLGKPTTTSLDDLCNAAEGRGIRIVTTSEGNWGRAVARMGRYLGVAVTVYVPRYMDEATRGKISREGAEVILHKGEYDDCLFTCRHVSEETGA # LLVLDTSFDGYTEIPQWVTDGYSSMLEEVDSQLRAAIDRPATHAIASVGVGSWAHAVVAHYKSKDPTAAVATVEPKTANCLATSLDAGKIISVKTDVT # IMNGMNCGTVSDIAWPYLRDGVDASVTVSEMQAHEAVLYLRAHGVNAGPCGAAPLAALRELKKLNWLGLGSDSVVVLYCTEAARAYKEPTSE] # end gene g9 ### # start gene g10 scaffold14 AUGUSTUS gene 31923 33129 . - . ID=g10 scaffold14 AUGUSTUS transcript 31923 33129 0.76 - . ID=g10.t1;Parent=g10 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t1 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t1 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t1 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t1.cds;Parent=g10.t1 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t1.cds;Parent=g10.t1 scaffold14 AUGUSTUS CDS 32916 33129 0.82 - 0 ID=g10.t1.cds;Parent=g10.t1 scaffold14 AUGUSTUS start_codon 33127 33129 . - 0 Parent=g10.t1 # coding sequence = [atgtctcaccatgagtcgtacgactcgcacaagatgccaaatatgcatgtgcaacagggtcccgatatggccatgaccg # atgctttgcgtaaacaccttacgcgccacattctatcaccgggacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagg # gagatgtttgcagaagccactggtgtctttttctacgtatatcccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttggg # atccgttttcacgatagggctggcttatggtataggcgtttcccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatca # ccatctgcttcgccatttggcaaggatttccgtggagaaaggtgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctg # tacgggcagtaccatcagcaaatcgaggtttatagattgggactggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttac # gtcatatccgctggggagtcagacgaatcaggcatggttggttttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcg # atccatctaatcccttcatctcagctggcatcgcaccattcgtcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagt # accaatcttgcccgagatctaggcgggcgccttgtagccatgttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatctt # catcaatatacctgccacgatttttgcgacgtgcttttacgagttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgagg # atggagtggatgggattgcgagacatttgagtcagacggggttgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcag # tcttcgaggatatcttga] # protein sequence = [MSHHESYDSHKMPNMHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAA # TAAFILQKESPALGSVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLG # MPEVFMGSPASIFTSYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGS # DAFTYMSYWWIGIFINIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS] scaffold14 AUGUSTUS transcript 31923 33087 0.11 - . ID=g10.t2;Parent=g10 scaffold14 AUGUSTUS stop_codon 31923 31925 . - 0 Parent=g10.t2 scaffold14 AUGUSTUS intron 32358 32419 1 - . Parent=g10.t2 scaffold14 AUGUSTUS intron 32848 32915 0.99 - . Parent=g10.t2 scaffold14 AUGUSTUS CDS 31923 32357 1 - 0 ID=g10.t2.cds;Parent=g10.t2 scaffold14 AUGUSTUS CDS 32420 32847 0.94 - 2 ID=g10.t2.cds;Parent=g10.t2 scaffold14 AUGUSTUS CDS 32916 33087 0.11 - 0 ID=g10.t2.cds;Parent=g10.t2 scaffold14 AUGUSTUS start_codon 33085 33087 . - 0 Parent=g10.t2 # coding sequence = [atgcatgtgcaacagggtcccgatatggccatgaccgatgctttgcgtaaacaccttacgcgccacattctatcaccgg # gacctgtcacgcagcgacggttggattttgagcatgcacgaccgacgtggctgagggagatgtttgcagaagccactggtgtctttttctacgtatat # cccgggatcgcagcaacagcagctttcatcttgcaaaaagagagccctgctttgggatccgttttcacgatagggctggcttatggtataggcgtttc # ccttgggattatttgttgcgcaggtacatcggggggacatttcaatccatccatcaccatctgcttcgccatttggcaaggatttccgtggagaaagg # tgccctactacattttcgcgcagatagctggcgccttcttcgccggcttgattctgtacgggcagtaccatcagcaaatcgaggtttatagattggga # ctggagaagttggggatgcctgaggtttttatggggagtccggccagtatttttacgtcatatccgctggggagtcagacgaatcaggcatggttggt # tttgattgagttttttgttgatgcgtttcttggcttcgccatctgggccgtcctcgatccatctaatcccttcatctcagctggcatcgcaccattcg # tcatcggtctcgcctacagtctcatgatatggggttttgcaagcgtaaccatcagtaccaatcttgcccgagatctaggcgggcgccttgtagccatg # ttgttttacggttccgatgccttcacgtacatgtcatattggtggattggcatcttcatcaatatacctgccacgatttttgcgacgtgcttttacga # gttggtgtttcgggatagtttggataagattgcgcttggacatgcgcagcatgaggatggagtggatgggattgcgagacatttgagtcagacggggt # tgatggatccgtatccagaggagagctcgttgaggaggaaggagtatgcgagtcagtcttcgaggatatcttga] # protein sequence = [MHVQQGPDMAMTDALRKHLTRHILSPGPVTQRRLDFEHARPTWLREMFAEATGVFFYVYPGIAATAAFILQKESPALG # SVFTIGLAYGIGVSLGIICCAGTSGGHFNPSITICFAIWQGFPWRKVPYYIFAQIAGAFFAGLILYGQYHQQIEVYRLGLEKLGMPEVFMGSPASIFT # SYPLGSQTNQAWLVLIEFFVDAFLGFAIWAVLDPSNPFISAGIAPFVIGLAYSLMIWGFASVTISTNLARDLGGRLVAMLFYGSDAFTYMSYWWIGIF # INIPATIFATCFYELVFRDSLDKIALGHAQHEDGVDGIARHLSQTGLMDPYPEESSLRRKEYASQSSRIS] # end gene g10 ### # start gene g11 scaffold14 AUGUSTUS gene 34994 38214 . - . ID=g11 scaffold14 AUGUSTUS transcript 34994 38214 0.35 - . ID=g11.t1;Parent=g11 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t1 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t1 scaffold14 AUGUSTUS intron 38139 38192 0.47 - . Parent=g11.t1 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 37966 38138 0.43 - 2 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t1.cds;Parent=g11.t1 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t1 # coding sequence = [atgtctagatactctcgcattgttaacatagacttggtcataggagagagcggccgctacgatgaagacgctcctaacc # gctacagtcggcctgatgcggtgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcga # ctcgccgcccagccgacctactccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatcc # gggccgccagcattatgattcacatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagta # acgatgccagtagttcttcggtgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggac # tgtccagtcccatcaaaattggtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcc # cgccgattttcttgacaaccgattcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaag # acgatgcgctgctggcgagaacattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctgg # aagaagatagtagtgtgcatcgttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcat # tgccaaagctaagatcaacaaactcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtcc # agaagggcaacactccggttcaactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcaga # tgtctcgagcctaatatttgtgtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagaca # ttgtgccggcgcttgtggagagatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataaga # tgtcgaatatacttgataagcctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaagga # gaacccatggtcaaatattttgctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgtta # cgagctggtggcaaagaagggcagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatct # cgcaacgtcggagatggcttaacggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcga # aagtgcatgctgcagatcgaagtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgt # gggctcgctgggtgatccgactttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttca # ttctcgccttgggcaatacgccgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccact # gtctatctcagcgtcaaatctgtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctc # tatgctttccacctacgtcttgtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctg # gaggcggttcagtcgcctctggaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgcc # gaggcacgcaaagaagaagagtcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatatt # cagcaacttgtcgttgatcacccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaact # ctgacctttacctctacattatcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgct # gggatctga] # protein sequence = [MSRYSRIVNIDLVIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLR # EAYESTFQNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPR # ESTHMRYSAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRS # AALLAGLGVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKH # SIFKLWNVFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFF # TANMYLAEDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAW # FALGNFYLVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIG # DLLTNKTFATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFY # YASVRSWIVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI] scaffold14 AUGUSTUS transcript 34994 38214 0.17 - . ID=g11.t2;Parent=g11 scaffold14 AUGUSTUS stop_codon 34994 34996 . - 0 Parent=g11.t2 scaffold14 AUGUSTUS intron 35009 35061 1 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 35522 35657 0.87 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 35799 35851 1 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 36061 36125 1 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 36290 36340 1 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 36978 37202 0.99 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 37920 37965 0.89 - . Parent=g11.t2 scaffold14 AUGUSTUS intron 38118 38192 0.26 - . Parent=g11.t2 scaffold14 AUGUSTUS CDS 34994 35008 1 - 0 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 35062 35521 1 - 1 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 35658 35798 0.87 - 1 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 35852 36060 1 - 0 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 36126 36289 1 - 2 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 36341 36977 0.88 - 0 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 37203 37919 0.89 - 0 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 37966 38117 0.25 - 2 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS CDS 38193 38214 0.96 - 0 ID=g11.t2.cds;Parent=g11.t2 scaffold14 AUGUSTUS start_codon 38212 38214 . - 0 Parent=g11.t2 # coding sequence = [atgtctagatactctcgcattggagagagcggccgctacgatgaagacgctcctaaccgctacagtcggcctgatgcgg # tgccgcttcaacatattcccagtcatgaggactttgctacggatggacaacattcctacatggatacccgggatcgactcgccgcccagccgacctac # tccgttgataatctagcttactcttatggacttagagaagcatacgagtcaacattccagaacatcccagagcatccgggccgccagcattatgattc # acatccagctgaagaagcagatccagcgtattatgacgatgatgataccagaccaatgctagatcgtcaccacagtaacgatgccagtagttcttcgg # tgacactgacagtgcaggtcccgagatgggccaccatccagtatgtcccattgttcaaaggcaacctggttttggactgtccagtcccatcaaaattg # gtcaatcagttggcgacaggggatgaacagcctcgtgaatctacgcacatgagatattcagcagcaacttgcgatcccgccgattttcttgacaaccg # attcacattgcgccaaaaattatatcaacaaccgagagcagttgaactcttcatcgttgtcacaatgtacaatgaagacgatgcgctgctggcgagaa # cattgatagggattttccagaatgtcaattacatggaaagtttgagggatagcacgatgtggggtgctaacgcctggaagaagatagtagtgtgcatc # gttagtgacggaatcgcgaagatcaatccccgttctgcagcacttcttgctggtctgggtgtctttcagcaaggcattgccaaagctaagatcaacaa # actcgagaccgaggcccatatattcgagtacacaacgcaaatggaaccagtaatgagaggcgagacagtctccgtccagaagggcaacactccggttc # aactgctcttctgcttgaagcaaaagaatgcgcagaagatcaattcgcatcgctggttctttcaagcctttggcagatgtctcgagcctaatatttgt # gtactgctcgatgctggaaccaaacctggtaagcactcgatattcaaactttggaacgttttcgatcgaaacagacattgtgccggcgcttgtggaga # gatcaaggcagacttaggaagagggggtaaaaacttgttgaatccattggtcgcgactcaaaactttgaatataagatgtcgaatatacttgataagc # ctctggaatcagctttcggcttcatctcggtccttccaggagccttctctgcttataggtacgaggctcttcaaggagaacccatggtcaaatatttt # gctggagagaaaatgcacaataacagcaatttctttactgcgaatatgtacctggctgaggaccgaattctatgttacgagctggtggcaaagaaggg # cagcaaatgggttctccaatacgtaaagaactccacaggagaaacagatgttccgacagaagtgcctgacttcatctcgcaacgtcggagatggctta # acggtagtctcttcgctgctgtttacaccgtggtccatttctggaaaatctggcaatccggccacgggtttgttcgaaagtgcatgctgcagatcgaa # gtagtctaccaggtcattagcatgatctttgcttggttcgccttgggcaacttttacttggtcttcaaaattcttgtgggctcgctgggtgatccgac # tttacttggaaaagcaggtttggtgctatcggtattcttcgagtggtcttatgtcatctgcctcatcgcttgcttcattctcgccttgggcaatacgc # cgaaaggaacgaagaaggtctatgttggcatgaccatctattgggcaatcgtgatgacttacctcatgtttgccactgtctatctcagcgtcaaatct # gtccagtcggaaatcaaagatggctttaagattggcgatttgctgacgaataagacctttgcgacacttattctctctatgctttccacctacgtctt # gtgtcaaaccctcaaatgtatcggctcatttgctaacaacacaatagggggcactaaaggcgccaacgatgcacctggaggcggttcagtcgcctctg # gaaaagacggcaaagcaggtgtcgagcttccatccgatccagacgctcaatacaagaaagagctcgaagtcctcgccgaggcacgcaaagaagaagag # tcgaaaacaagcgacgaagatgtcaagaaattctactacgcttctgttcgcagctggatcgtgatggcgtggatattcagcaacttgtcgttgatcac # ccttgtgatgaaagccggttcggtcgggatcattaccaagaccaagacgagtgaggaggaggcgcagcgcaagaactctgacctttacctctacatta # tcttgtggagtgtagcgggactcagtgcgttcagatttgttggctcggtttggttcttgattcatagaaagtttgctgggatctga] # protein sequence = [MSRYSRIGESGRYDEDAPNRYSRPDAVPLQHIPSHEDFATDGQHSYMDTRDRLAAQPTYSVDNLAYSYGLREAYESTF # QNIPEHPGRQHYDSHPAEEADPAYYDDDDTRPMLDRHHSNDASSSSVTLTVQVPRWATIQYVPLFKGNLVLDCPVPSKLVNQLATGDEQPRESTHMRY # SAATCDPADFLDNRFTLRQKLYQQPRAVELFIVVTMYNEDDALLARTLIGIFQNVNYMESLRDSTMWGANAWKKIVVCIVSDGIAKINPRSAALLAGL # GVFQQGIAKAKINKLETEAHIFEYTTQMEPVMRGETVSVQKGNTPVQLLFCLKQKNAQKINSHRWFFQAFGRCLEPNICVLLDAGTKPGKHSIFKLWN # VFDRNRHCAGACGEIKADLGRGGKNLLNPLVATQNFEYKMSNILDKPLESAFGFISVLPGAFSAYRYEALQGEPMVKYFAGEKMHNNSNFFTANMYLA # EDRILCYELVAKKGSKWVLQYVKNSTGETDVPTEVPDFISQRRRWLNGSLFAAVYTVVHFWKIWQSGHGFVRKCMLQIEVVYQVISMIFAWFALGNFY # LVFKILVGSLGDPTLLGKAGLVLSVFFEWSYVICLIACFILALGNTPKGTKKVYVGMTIYWAIVMTYLMFATVYLSVKSVQSEIKDGFKIGDLLTNKT # FATLILSMLSTYVLCQTLKCIGSFANNTIGGTKGANDAPGGGSVASGKDGKAGVELPSDPDAQYKKELEVLAEARKEEESKTSDEDVKKFYYASVRSW # IVMAWIFSNLSLITLVMKAGSVGIITKTKTSEEEAQRKNSDLYLYIILWSVAGLSAFRFVGSVWFLIHRKFAGI]