Mercurial > repos > iracooke > protk_trans_proteomic_pipeline
diff README @ 3:e85a18371516 default tip
Update
author | Ira Cooke <iracooke@gmail.com> |
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date | Sun, 09 Jun 2013 08:17:06 -0500 |
parents | cedd5e884349 |
children |
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--- a/README Tue Mar 05 00:14:39 2013 -0500 +++ b/README Sun Jun 09 08:17:06 2013 -0500 @@ -5,16 +5,30 @@ 1. Download an install script from dropbox 2. Install several perl packages locally (inside the install directory) -3. Download the TPP source code from dropbox +3. Download the TPP source code 4. Build the TPP Intermediate files in this process are stored in ~/.protk/tmp/download and ~/.protk/tmp/build Requirements: -This package depends on the galaxy_protk -Please see instructions for that package before installing +Please see instructions for package galaxy_protk and ensure those are met + +In addition several system packages are required in order to build the TPP. The lists +below work for specific test systems. If you have a different system you may need additional packages. + +Ubuntu-12.04-LTS 64 Bit Server With OpenSSH preinstalled: + # For Building the TPP + subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev -In addition the following packages are required in order to build the TPP -subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev build-essential -libgd2-xpm libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev + # For Installing perl modules locally (for the TPP) + liblocal-lib-perl cpanminus +Centos 6 Server + # For Building the TPP + libcurl-devel libcurl libxml2 libxml2-devel expat-devel gd gd-devel expat gnuplot libxslt swig + + # For Perl Module Management + perl-local-lib + + # On Centos you will need to install cpanminus manually with this command + curl -L http://cpanmin.us | perl - --self-upgrade