# HG changeset patch
# User iracooke
# Date 1362377349 18000
# Node ID a735edbe11fff5f2f48b0a78fc7e867127db737d

Uploaded

diff -r 000000000000 -r a735edbe11ff repository_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/repository_dependencies.xml	Mon Mar 04 01:09:09 2013 -0500
@@ -0,0 +1,8 @@
+<?xml version="1.0"?>
+<!-- <repositories description="protk-tpp requires the protk rubygem">
+     <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="5610168f3b53"/>
+</repositories>
+ -->
+<repositories description="Requires the galaxy_protk package">
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="c10a62c886b8"/>
+</repositories>
diff -r 000000000000 -r a735edbe11ff tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Mar 04 01:09:09 2013 -0500
@@ -0,0 +1,27 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="trans_proteomic_pipeline" version="4.6.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
+                <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.1.9</action>
+                <action type="move_file">
+                    <source>install_tpp.sh</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="PROTK_TPP_ROOT" action="set_to">$INSTALL_DIR</environment_variable>
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>                
+            </actions>
+        </install>
+        <readme>
+            Compiling the TPP requires g++ subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev libgd2-dev libgd2-xpm-dev libfuse-dev libcurl4-openssl-dev 
+
+            The Trans Proteomic Pipeline is a collection of proteomics tools.  For more information see http://tools.proteomecenter.org/wiki/index.php?title=Software:TPP
+
+            This package installs the TPP (Trans Proteomic Pipeline) using an installation script contained in protk. It requires the galaxy_protk package to be installed before it will work.
+        </readme>
+    </package>
+
+</tool_dependency>
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