Mercurial > repos > iracooke > protk_trans_proteomic_pipeline

changeset 2:cedd5e884349

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Uploaded
author iracooke
date Tue, 05 Mar 2013 00:14:39 -0500
parents f302406a0297
children e85a18371516
files README repository_dependencies.xml tool_dependencies.xml
diffstat 3 files changed, 22 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Tue Mar 05 00:14:39 2013 -0500
@@ -0,0 +1,20 @@
+This package installs the Trans Proteomic Pipeline Commandline Tools
+
+Installing this package should proceed automatically however for the purpose 
+of troubleshooting these are the steps it will perform
+
+1. Download an install script from dropbox
+2. Install several perl packages locally (inside the install directory) 
+3. Download the TPP source code from dropbox
+4. Build the TPP
+
+Intermediate files in this process are stored in ~/.protk/tmp/download and ~/.protk/tmp/build
+
+Requirements:
+This package depends on the galaxy_protk 
+Please see instructions for that package before installing
+
+In addition the following packages are required in order to build the TPP
+subversion libbz2-dev swig expat libpng12-dev gnuplot libperl-dev build-essential
+libgd2-xpm libfuse-dev libcurl4-openssl-dev libxml2-dev libgd2-xpm-dev
+
--- a/repository_dependencies.xml	Mon Mar 04 01:10:43 2013 -0500
+++ b/repository_dependencies.xml	Tue Mar 05 00:14:39 2013 -0500
@@ -4,5 +4,5 @@
 </repositories>
  -->
 <repositories description="Requires the galaxy_protk package">
-     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/>
+     <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="dac478a72c1d"/>
 </repositories>
--- a/tool_dependencies.xml	Mon Mar 04 01:10:43 2013 -0500
+++ b/tool_dependencies.xml	Tue Mar 05 00:14:39 2013 -0500
@@ -4,7 +4,7 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action>
-                <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.1.9</action>
+                <action type="shell_command">sh install_tpp.sh $INSTALL_DIR 1.2.0</action>
                 <action type="move_file">
                     <source>install_tpp.sh</source>
                     <destination>$INSTALL_DIR</destination>