Mercurial > repos > iracooke > protxml_to_gff

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author iracooke
date Sat, 14 Jun 2014 18:18:41 -0400
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1 This tool takes a protxml file and a reference genome and produces a gff file with genomic coordinates of all peptides in the protxml file. The mapping process relies on the presence of genomic coordinates in the protxml file, encoded in the protein names. To generate such a file you should run all searches against a database that was generated with the companion tool "proteindb_from_gff3".
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iracooke
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3 Requirements:
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4 This package uses protk which must be installed separately.
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iracooke
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6 For instructions please see: https://github.com/iracooke/protk/#galaxy-integration