Mercurial > repos > iracooke > sixframe_translate

comparison sixframe_translate.xml @ 1:10465e20d9a2 draft

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Docker support and update for protk 1.4
author iracooke
date Thu, 26 Mar 2015 19:56:34 -0400
parents d3850859bc50
children e20c4df2bc28
comparison
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0:d3850859bc50 1:10465e20d9a2
1 <tool id="sixframe_translate" name="Generate 6-frame translation" version="1.0.0"> 1 <tool id="sixframe_translate" name="Generate 6-frame translation" version="1.1.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.3">protk</requirement> 3 <container type="docker">iracooke/protk-1.4.1</container>
4 <requirement type="package" version="1.4">protk</requirement>
4 </requirements> 5 </requirements>
5 6
6 <description>Translates DNA/RNA to protein</description> 7 <description>Translates DNA/RNA to protein</description>
7 8
8 <command> 9 <command>
24 25
25 <outputs> 26 <outputs>
26 <data format="fasta" name="output" /> 27 <data format="fasta" name="output" />
27 </outputs> 28 </outputs>
28 29
30 <tests>
31 <test>
32 <param name="fasta_file" value="small_genome.fasta" format="fasta"/>
33 <output name="output" format="fasta">
34 <assert_contents>
35 <has_text text="SVQHWFYRFQAGHPRVFCPKNGPRRLW" />
36 </assert_contents>
37 </output>
38 </test>
39 </tests>
40
29 41
30 <help> 42 <help>
31 43
32 **What it does** 44 **What it does**
33 45